Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGCAGTGCTTATTGCTGCTGGGTTTTTTGGTTACATGCTGGCACTTCTGCAACGTAGAGTGGGCACAATTGTGTCCTCTGAAAATgtgagtacccatcttgtactctagtctttttgttttcttaataatccagtagtatcagcctcagataatttctagattacataatctatgctcgaattta...

Basic information

species Vitis vinifera
transcript Vv01s0026g00330.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G39910.1 (Glycine max), 5'ss of exon 7
GGATTGCAGTGCTTATTGCTGCTGGGTTTTTTGGTTACATGCTGGCACTTCTGCAACGTAGAGTGGGCACAATTGTGTCCTCTGAAAATgtgagtaccca-tcttgtactctagtctttttgttttcttaataatccag--tagtatcagcctcagataatttctagattacataatctatgctcgaattta
|||||||| ||||| |||  ||||| || |||||||||||||||||| | ||||| |||||  | || ||||||||||| ||  |  | || ||| |  | |||||   | |    | |      |   | | |   ||  |  ||      |    |  ||| ||  | | ||| ||  |  | ||||   
GGATTGCAATGCTTGTTGGGGCTGGATTCTTTGGTTACATGCTGGCATTACTGCAGCGTAGGCTTGGTACAATTGTGTCATCCCAGGAAgttagtgcttagtcttgccttattccatctcaagcattgcactgaatgagactgatagtgatatagacttttttataactaaaatagtcattaat-gaata--