Sequence
atgc intronic sequence ATGC exonic sequenceGTTAGGGTAAACACTCGTCTTCTTTATCAGCAGACAAAATTCAACCTTGTTAGGGAAGAGAGTGAGGGCTATTCCAAGCTGgtatggtcatttccagactgtttcttttaattaccatcaatttcttcattgattggtcttcttttgcaatgctggaggatgataaatcatctaagaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g06120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g68810.1 (Oryza sativa), 5'ss of exon 6
GTTAGGGTAAACACTCGTCTTCTTTATCAGCAGACAAAATTCAACCTTGTTAGGGAAGAGAGTGAGGGCTATTCCAAGCTGgtatggtcatttccagactgtttcttttaattaccatcaatttcttcattgattggtcttcttttgcaatgctggaggat-gataaatcatctaagaaaaa
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GTCAGGGTCAACACACGTCTCCTTTATCAGCAAACTAAATTCAACCTTTTAAGAGAGGAAAGTGAGGGCTACGCCAAATTGgtacgtatttctatccgccaaacctcttatgtttgttcttatgatgaactgagta-ttttcttaggaaacttcagaaatcagaaccactatattttctgca
upper sequence: Vv01s0011g06120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G34330.1 (Glycine max), 5'ss of exon 6
GTTAGGGTAAACACTCGTCTTCTTTATCAGCAGACAAAATTCAACCTTGTTAGGGAAGAGAGTGAGGGCTATTCCAAGCTGgtatggtcatttccagactgtttcttttaattaccatcaatttcttcattgattggtcttcttttgc---------aatgctggaggatgataaa-tcatctaagaaaaa--------------------------------------------------------------------
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GTCAGAGTTAATACCCGACTTCTCTATCAGCAAACCAAATTCAACCTTCTCAGGGAAGAGAGTGAGGGCTATGCAAAGCTGgtataatcataatta--cctttctctggactttttagaatgttttctatggattattttttacttattacaaccatagtgattttggctgaaaatctcatctttaacaattgttttgttattgcatggatccaattagatgtttttgtatgttgaattgaatttagttaattgtgtag
upper sequence: Vv01s0011g06120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G05320.1 (Glycine max), 5'ss of exon 3
GTTAGGGTAAACACTCGTCTTCTTTATCAGCAGACAAAATTCAACCTTGTTAGGGAAGAGAGTGAGGGCTATTCCAAGCTGgtatggtcatttccagactgtttct--tttaattaccatca-att--tcttcattgattggtcttcttttgcaat--gctggaggatg-ataaatcatctaagaaaaa-----------------------------------------------------------
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GTCAGAGTTAATACCCGAATTCTCTATCAGCAAACCAAATTCAACCTTCTCAGAGAAGAGAGTGAGGGCTATGCAAAGCTGgtatgatcatagttac-ctatctctggacttattacaaccatactgattttggctgaa-gatcatctttaacaattgttttgttattgcatgaatttgttttgcgtatgttgcatggatccaattagatgtttttgtatgttgtattgaatttagttaattgtgtag
upper sequence: Vv01s0011g06120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G24706.2 (Arabidopsis thaliana), 5'ss of exon 7
GTTAGGGTAAACACTCGTCTTCTTTATCAGCAGACAAAATTCAACCTTGTTAGGGAAGAGAGTGAGGGCTATTCCAAGCTGgtatggtc------atttccagactgtttcttttaattaccatcaatttcttcattgattggtcttcttt-tgcaatgctggaggatgataaatcatctaagaaaaa
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GTGCGATTAAACACTCGTCTTCTGTACCAGCAGACAAAGTTCAACTTACTCCGTGAAGAAAGCGAGGGATATGCCAAATTGgttcgttatagaagatctctagcagtctagtttttttttttttttttttttttatctattgtcattctttctgtccacttcgtttctattgtcttttctt-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34549370|gb|CF517602.1|CF517602EST: AGACAAAATTCAACCTTGTTAGGGAAGAGAGTGAGGGCTATTCCAAGCTG GTTACCCTTCTATGTCAAGGTTCTGAATCTTCAAGTCAAA-TGCATCAGCA
genomic: AGACAAAATTCAACCTTGTTAGGGAAGAGAGTGAGGGCTATTCCAAGCTGgtatggtcat ... ggatttgtagGTTACCCTTCTATGTCAAGGTTCTGAATCTTCAAGTCAAAATGCATCAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAGGGTAAACACTCGTCTTCTTTATCAGCAGACAAAATTCAACCTTGTTAGGGAAGAGAGTGAGGGCTATTCCAAGCTGgtatggtcatttccagactgtttcttttaattaccatcaatttcttcattgattggtcttcttttgcaatgctggaggatgataaatcatctaagaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa