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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAACAGTTGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATGgtatgccctttaactgctcctactgattgattatcttagaatttgttaacctcagtttgtatgaacttttgtcaaccatggggccatgacttaatcattt...

Basic information

species Vitis vinifera
transcript Vv01s0011g04180.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G41580.1 (Glycine max), 5'ss of exon 7
GAGCAACAGTTGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATGgtatgccctttaactgctcctactgattgattatct-tagaatttgttaacctcagtttgtatgaacttttgtcaaccatgggg-ccatgacttaatcattt
|      | ||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||| || | || || ||||  | ||   || | | ||| || |||| |  |  |||  | |||   ||||      ||   | ||| | |  |||||   
GGATGGTAATTGCTTCCTTTTGTTACTTACAATTCTTTCCACCTCCTTATGACATAGACGgtatgaccatgaattgttcct-ttcatcatttctttatagtatgtgttgatatt-gttgatgtgataatttgctttgaatcccgtccaagtccaaatcagcc

upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G25650.1 (Glycine max), 5'ss of exon 7
GAGCAACAGTTGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATGgtatgccctttaactgctcctactgattgattatcttagaatttgttaacctcagtttgtatgaacttttgtcaaccatggggccatgactta-atcattt
|    | | ||||||||||||||||||| |||||||||||||| || |||||| ||||||||||| || | || |  |||  |       |  | |||| || |||| |  | | ||  | |||   ||||      ||   | |       | ||||   
GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATGgtatgaccatgaatttttccgtcaatcatttctttttagtatgtgttgatatta-ttgatgtgataatttgctttgaatcccgtcgaagtccatatcagcc

upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G18450.2 (Glycine max), 5'ss of exon 7
GAGCAACAGTTGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATGgtatgccctttaactgctcctactgattgattatcttagaatttgttaacctcagtttgtatgaacttttgtcaaccatggg-gccatgacttaatcattt----
|    ||| |  |||| ||||||||||| |||||||||||||| || ||||||| |||||||||| || | || |  | ||     || |   | |||  || |||| || | | | | |||||  |  | |     |||   |   |      || ||||    
GTTTGACAATCTCTTCCTTTTGTTACTTACAATTCTTTCCACCTCCATATGACACAGATGgtatgtccatgaatttatactt----ttaaactttttattatctgttgacgttattgt-tatgatgtgctttttcttatgtatgtagtagtcggattatttgtta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110427784|gb|EC994235.1|EC994235
EST:     TGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATG                         GTTGGGGACCTCATGCATATTTTGAGATGTTAGCGGAAAGCCGAAATGGTA
genomic: TGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATGgtatgccctt ... gcatatgcagGTTGGGGACCTCATGCATATTTTGAGATGTTAGCGGAAAGCCGAAATGGTA
EST: gi|34362451|gb|CF404036.1|CF404036
EST:     TGCTTCATTTTGTTACTTGCAGTTCTTTCCACCCCCTTATGACATAGATG                         GTTGGGGACCTCATGCATATTTTGAGATGTTAGCGGAAAGCCGAAATGGTA
genomic: TGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATGgtatgccctt ... gcatatgcagGTTGGGGACCTCATGCATATTTTGAGATGTTAGCGGAAAGCCGAAATGGTA