1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTATTGACTCTGTTGTCTAAAGCTATGCCCAAGGCCAAGCTTTTCCCACAGAAAGATCTAGCTGAGCTAGCATTCAGAGATTCGAGGAAAAGGAAAATGgttcgttctgtgtctactctttttgacatttgtgcgcttgcatggcattgtaatggcagaaggagctggtactttacatcaatatggtctagagagccac...
species | Vitis vinifera |
transcript | Vv01s0011g03620.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGATCTAGCTGAGCTAGCATTCAGAGATTCGAGGAAAAGGAAAATG GCTGCCTACAATGTGATCTCGTACAATGATCAAATGCGACTAAGGACTGCTEST: gi|110389307|gb|EC954133.1|EC954133
genomic: AGAAAGATCTAGCTGAGCTAGCATTCAGAGATTCGAGGAAAAGGAAAATGgttcgttctg ... tttatgttagGCTGCCTACAATGTGATCTCGTACAATGATCAAATGCGACTAAGGACTGCT
EST: CAGAGATTCGAGGAAAAGGAAAATG GCTGCCTACAATGTGATCTCGTACAATGATCAAATGCGACTAAGGACTGCTEST: gi|45771154|gb|CN007006.1|CN007006
genomic: CAGAGATTCGAGGAAAAGGAAAATGgttcgttctg ... tttatgttagGCTGCCTACAATGTGATCTCGTACAATGATCAAATGCGACTAAGGACTGCT
EST: AGAAAGATCTAGCTGAGCTAGCATTCAGAGATTCGAGGAAAAGGAAAATG GCTGCCTACAATGTGATCTCGTACAATGATCAAATGCGACTAAGGACTGCT
genomic: AGAAAGATCTAGCTGAGCTAGCATTCAGAGATTCGAGGAAAAGGAAAATGgttcgttctg ... tttatgttagGCTGCCTACAATGTGATCTCGTACAATGATCAAATGCGACTAAGGACTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTATTGACTCTGTTGTCTAAAGCTATGCCCAAGGCCAAGCTTTTCCCACAGAAAGATCTAGCTGAGCTAGCATTCAGAGATTCGAGGAAAAGGAAAATGgttcgttctgtgtctactctttttgacatttgtgcgcttgcatggcattgtaatggcagaaggagctggtactttacatcaatatggtctagagagccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagagag