Sequence
atgc intronic sequence ATGC exonic sequenceGGTCTCGCACATTCAAGATCATTGATCTTGGAGCTGCAGCAGATTTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGgtatgttctctttgatcatgtagtatggtaactaattaatatccggccaacaaaattgaatctgaccaattgcatgtctgctcttttccccaaaacccta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03010.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os05g47560.1 (Oryza sativa), 5'ss of exon 6
GGTCTCGCACATTCAAGATCATTGATCTTGGAGCTGCAGCAGATTTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGgtatgttctctttgatcatgtagtatggtaactaattaatatccggccaacaaaattgaatctgaccaattgcatgtctgctcttttccccaaaacccta-------------------------------------------
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GATCTCGTACGTTCAAAATTATTGATCTTGGAGCAGCAGCTGATTTGCGAGTGGGCATCAACTATATTCCTAGTGAGTTCCTTTTAGATCCAAGgtactcaaaactacctcatgatccat---aactg--cactgctcg-caaagaagaagttatgttttaaagttaattaatgctataatgtgctaaaatatagtttgattagggatttgattgaagctttatcaatgctttgcag
upper sequence: Vv01s0011g03010.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G22490.1 (Glycine max), 5'ss of exon 8
GGTCTCGCACATTCAAGATCATTGATCTTGGAGCTGCAGCAGATTTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGgtatgttctctttgatcatgtagtatg-gtaactaattaatatccggccaa---caaaattgaatctgaccaattg-catgtctgctcttttccccaaaacccta
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AGTCTCGTACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTCGGAATCAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGgtatcttctttgacatta-ataacacaagtagccaactgactttgaacttaatcctctgctggaagtttctgtttaatgtgcataatcaattcattgatgg----
upper sequence: Vv01s0011g03010.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G11110.1 (Glycine max), 5'ss of exon 6
GGTCTCGCACATTCAAGATCATTGATCTTGGAGCTGCAGCAGATTTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGgtatgttctctttgatcatgtagtatggtaactaattaata--tccggccaacaaaattgaatctgaccaattgcatgtctgctcttttccccaaaacccta
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AATCACGTACATTCAAAATTATTGATCTTGGAGCTGCTACAGACCTGCGAGTTGGCATCAACTACATTCCGAAGGAGTTTCTTTTGGATCCAAGgtatcttctttgacattaaaaactcaagtagccaaattatagtttccgtcaacatacttggttttaattttttatttttggataggcaaaaacaaaatat--
upper sequence: Vv01s0011g03010.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G68830.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTCTCGCACATTCAAGATCATTGATCTTGGAGCTGCAGCAGATTTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGgtatgttctctttgatcatgtagtatggtaactaattaatatccggccaacaaaatt--gaatctgaccaattgcatgtctgctcttttccccaaaacccta----------------------
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GTTCTCGTTCTTTCAAGATTATCGATCTTGGAGCTGCAGCTGATTTGAGAGTGGGAATTAACTACATTCCAAAAGAGTTTCTCCTTGATCCAAGgtctttttcttttcaaaatttgtatctttctctggcaaggatcataaatgtgaactttctgttgttgtaaacttcacgttt-ctccgttaataagtatctttcttttcgggttgttgctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32268879|gb|CD718038.1|CD718038EST: TTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAG ATATGCAGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCTGCACC
genomic: TTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGgtatgttctc ... catgcttcagATATGCAGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCTGCACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCTCGCACATTCAAGATCATTGATCTTGGAGCTGCAGCAGATTTGAGAGTAGGGATCAATTATATTCCAAAGGAGTTTCTTTTGGACCCCAGgtatgttctctttgatcatgtagtatggtaactaattaatatccggccaacaaaattgaatctgaccaattgcatgtctgctcttttccccaaaacccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc