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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCCCCAGGGAACCATAAGTGATATGGTGAATGATGCTTCTCTAGGTGTCTCATTTGTGTGCAACAATATTGCTGAATATGGGGGTGATCCTAATAGgtaacaacttttctttttttctacatatcattgttgttgccttacagttttagttttcgttaacatgccttttcttttttcatgtttttgttcatgtag

Basic information

species Vitis vinifera
transcript Vv01s0011g02530.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g02530.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G18930.1 (Glycine max), 5'ss of exon 6
ATTTCCCCCAGGGAACCATAAGTGATATGGTGAATGATGCTTCTCTAGGTGTCTCATTTGTGTGCAACAATATTGCTGAATATGGGGGTGATCCTAATAGgtaacaacttttctttttttctacatatcattgttgttgc--cttacag--ttttagttttcgttaa----catgccttttcttttttcatgtttttgttcatgtag-------------
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ATTTTCCCCAGGGAACCATCAGTGATATGATAGTTGATGCTTCTCAAGGCATCTCATTTGTGTGCAACAATATTGCAGAATATGGAGGTGACCCTAACAGgtaaataatcattcccttaactccaaagttttctcattacgacatccaactttttcacttgctttaagggtaatggcttctcgtgatcaataatgatgccttttccattttttttcatag