1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCATTTTATGATAAAGTTTCTTCTGGAGGAATTGAATTTGAAGATGGAATTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAGgttgtttcttttgatggaaagaattttttctattagtcatgctttttaatttttagattgacactaaggtaggaactgttttttgtattagtcttattgg...
species | Vitis vinifera |
transcript | Vv01s0011g01460.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAG AATCACAAGGATGTTTTGGTTGTTGTTGATTCACAAGATTATTCCGCACTCEST: gi|110686853|gb|EE063754.1|EE063754
genomic: TTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAGgttgtttctt ... tatgaaacagAATCACAAGGATGTTTTGGTTGTTGTTGATTCACAAGATTATTCCGCACTC
EST: TTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAG AATCACAAGGATGTTTTGGTTGTTGTTGATTCACAAGATTATTCCGCACTCEST: gi|110726021|gb|EE103088.1|EE103088
genomic: TTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAGgttgtttctt ... tatgaaacagAATCACAAGGATGTTTTGGTTGTTGTTGATTCACAAGATTATTCCGCACTC
EST: TTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAG AATCACAAGGATGTTTTGGTTGTTGTTGATTCACAAGATTATTCCCCACTC
genomic: TTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAGgttgtttctt ... tatgaaacagAATCACAAGGATGTTTTGGTTGTTGTTGATTCACAAGATTATTCCGCACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCATTTTATGATAAAGTTTCTTCTGGAGGAATTGAATTTGAAGATGGAATTGAGAACATTGATATTGGTGGCCCAGCCATGATCAGAGCGGCTGCAAAGgttgtttcttttgatggaaagaattttttctattagtcatgctttttaatttttagattgacactaaggtaggaactgttttttgtattagtcttattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaggaa