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TGTGCCAATTCATTGGTACATTATGACGAGTCCATTTACTGATGATGTCACCCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCTTGAAGCAGATCAAgtaagatgttttaacactcttatttttgttataattgttagttcttgatttctggtgtttttcctcactctgcaatgtgttcttttgtcccttattttatattttattttattttatttattttattattgatgcag
species | Vitis vinifera |
transcript | Vv01s0011g01420.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGCAAATTTTTTGAAAGCCATAA-TACTTTGGCCTTGAAGCAGATTCAA -TCACCTTCTTCCAGCAAGGAACCATACCTTGTATTTCAAAGGATGGCAGEST: gi|110401181|gb|EC967782.1|EC967782
genomic: CCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCTTGAAGCAGAT-CAAgtaagatgtt ... attgatgcagATCACCTTCTTCCAGCAAGGAACCATACCTTGTATTTCAAAGGATGGCAG
EST: CCCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCTTGAAGCAGATCAA ATCACCTTCTTCCAGCAAGGAACCATACCTTGTATTTCAAAGGATGGCAGAEST: gi|161713618|gb|FC063422.1|FC063422
genomic: CCCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCTTGAAGCAGATCAAgtaagatgtt ... attgatgcagATCACCTTCTTCCAGCAAGGAACCATACCTTGTATTTCAAAGGATGGCAGA
EST: CCCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCTTGAAGCAGATCAA ATCACCTTCTTCCAGCAAGGAACCATACCTTGTATTTCAAAGGATGGCAGAEST: gi|110728445|gb|EE104021.1|EE104021
genomic: CCCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCTTGAAGCAGATCAAgtaagatgtt ... attgatgcagATCACCTTCTTCCAGCAAGGAACCATACCTTGTATTTCAAAGGATGGCAGA
EST: CCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCCTTGAAGCAGATCAA ATCACCTTTCTTCCAGCAGGGAAC-ATACCTTGGTATTTCAAAGGATGGCA
genomic: CCGCAAATTTTTTGAAAGCCATAAATACTTTGGCC-TTGAAGCAGATCAAgtaagatgtt ... attgatgcagATCACCTT-CTTCCAGCAAGGAACCATACCTTG-TATTTCAAAGGATGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGCCAATTCATTGGTACATTATGACGAGTCCATTTACTGATGATGTCACCCGCAAATTTTTTGAAAGCCATAAATACTTTGGCCTTGAAGCAGATCAAgtaagatgttttaacactcttatttttgttataattgttagttcttgatttctggtgtttttcctcactctgcaatgtgttcttttgtcccttattttatattttattttattttatttattttattattgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA