Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGACCTTTTGGAGCTGCAGGATCCGAAATTGGCTTCAACTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagcaatttttgtatgcttttccatactttacttttatgatccattgttctctcctttttaacacatgcttatatgttaaaccacatacag

Basic information

species Vitis vinifera
transcript Vv01s0011g01080.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349826229|gb|FQ416034.1|FQ416034
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAAGCGC-TTGCTCGTGATCC
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAA-GCGCCTTGCTCGTGATCC
EST: gi|349830971|gb|FQ418255.1|FQ418255
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351025692|gb|FQ426706.1|FQ426706
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTNNNNNNNNGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|30327285|gb|CD010547.1|CD010547
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|30325264|gb|CD008526.1|CD008526
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|349824034|gb|FQ417421.1|FQ417421
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351019251|gb|FQ429411.1|FQ429411
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAACCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|349832506|gb|FQ421067.1|FQ421067
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAA-TAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|349821313|gb|FQ404445.1|FQ404445
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAAATAA-GCGCCTTGCTCGTGATCCAAATAG
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAA-TAAAGCGCCTTGCTCGTGATCCCAATAG
EST: gi|351053396|gb|FQ455732.1|FQ455732
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATA
EST: gi|32248332|gb|CD714151.1|CD714151
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351028541|gb|FQ444822.1|FQ444822
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAGCGCCTTGCTCGTGATCCCCATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351053071|gb|FQ456678.1|FQ456678
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351016333|gb|FQ446193.1|FQ446193
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCTCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAG
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAG
EST: gi|30328160|gb|CD011422.1|CD011422
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|32247267|gb|CD713086.1|CD713086
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351013379|gb|FQ425410.1|FQ425410
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAA
EST: gi|351015737|gb|FQ431692.1|FQ431692
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGACCTTTTGGAGCTGCAGGATCCGAAATTGGCTTCAACTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagcaatttttgtatgcttttccatactttacttttatgatccattgttctctcctttttaacacatgcttatatgttaaaccacatacag

- - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA