1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTGgtaactccttgaattttagtccccttccttcgattttttttcggtttccttaactgtaaaaagaacatcagacgtcctccacctgccatgtatatgtata...
species | Vitis vinifera |
transcript | Vv01s0011g00600.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTG GCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCAEST: gi|71884544|gb|DT033599.1|DT033599
genomic: CCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTGgtaactcctt ... tctattttagGCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCA
EST: ATTGGCCCCTGTTGTTATTG GCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCAEST: gi|351034668|gb|FQ458025.1|FQ458025
genomic: ATTGGCCCCTGTTGTTATTGgtaactcctt ... tctattttagGCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCA
EST: CCATCAAATTTCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTG GCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCAEST: gi|56409591|gb|CX017843.1|CX017843
genomic: CCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTGgtaactcctt ... tctattttagGCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCA
EST: CCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTG GCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCAEST: gi|22012480|gb|BQ797514.1|BQ797514
genomic: CCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTGgtaactcctt ... tctattttagGCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACTGGCTTCA
EST: GCTGTCA-TGGCCCCTGTTG-TATTG GCGTATCAAT-GCATCTCTGACTGAACTTTC-TTTAACTGGACTGGGC-TC
genomic: GCTGTCATTGGCCCCTGTTGTTATTGgtaactcctt ... tctattttagGCGTATCAATGGCATCTCTGACTGAACTTTCTTTTAACTGGACT-GGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTGGAGCCATTTTTCAATGCTGCTGCTTCTCAGTTTGTTTTAGGCCATCAAATTCCCTTTTCCCTCTGGCTGTCATTGGCCCCTGTTGTTATTGgtaactccttgaattttagtccccttccttcgattttttttcggtttccttaactgtaaaaagaacatcagacgtcctccacctgccatgtatatgtata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccacc