Sequence
atgc intronic sequence ATGC exonic sequenceTGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGgtagactgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacactttcttagaaattcaaaatatgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 6
TGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGgtagactgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacactttcttagaaattcaaaatatgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcag---
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TGGTTTCTGAGGGACTTGACAGGAATGCTTGGAGGGATATTGTTCACCTTTTACCAGgtactcacttttctg-tactataaacactggtctcattagtgaagctttgatcagctgccattgct---ccttca-----aggcatcgttgtga-atattggttctggaacttctgatatactttgtctagtcagcatatcagtgtctatatttattttctgttctttctttcccaccag
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G13010.1 (Glycine max), 5'ss of exon 2
TGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGgtagactgt-tctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacacttt--cttagaaattcaaaatatgt----ttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcag-----
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TGGTTTTTGAGGGATCTAACTGGTATGCTTGGAGGAATCTTATTCACATTTTACCAGgt---ctgtgtctctcatacaaacatgttcctt------tatct-tacttattttgaactgaattgcgaagtactagctctatgcgg-actgtcatatacttggattggcatatgctgattctctcctatctaatgattctgatttt--tttaattatatttttctttatcttgtcccatctgttgcag
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G07190.3 (Glycine max), 5'ss of exon 6
TGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGgtagactgttctt---------tgctgttgta----atgactattaga---aaatatttgtctttatttacttatgga-tgttgggtttttggctgtaaatgttattgtggcacactt-tcttagaaattcaaaata-tgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcag
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TGGTTTTTGAGAGATCTAACTGGTATGCTTGGAGGAATCTTATTCACATTTTACCAGgtctgcttctctcatacaaacatgttcctttatcttattaattttgaactgaaatgtgcaatactagctctatgcagactgtcatatacttggattggcatat-gctgtttctctcttatctaatgattttgaaataatttttgaattatatttctctttgtcttgtcccatatgttgcag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708215|gb|FC057847.1|FC057847EST: CCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAG GGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTG
genomic: CCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGgtagactgtt ... tactgttcagGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTTTTTGAGGGACCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGgtagactgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacactttcttagaaattcaaaatatgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcag
- - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - GGAGGA