Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGCATGCTGAAGTTGCTGAGAAGTTTGTATCCTGTGACAACCGAATACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGgtgagtacctctctcagacacacaaagtgaaaattctgcttgtgtatttatggtaaaaatttatctcatgccctgttgcttgttgcaatttacaggcaac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g67550.1 (Oryza sativa), 5'ss of exon 6
GTGATGCATGCTGAAGTTGCTGAGAAGTTTGTATCCTGTGACAACCGAATACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGgtgagtacct--ctctcagacacacaaagtgaaaattctgcttgtgtatttatggtaaaaatttatctcatgc-cctgttgcttgttgcaatttacaggcaac---------------
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GTAATGCATGCTGAAGTTGCAGAGAAATACATTGGTTGCGACAATCGTATAATCCTTGTTGGTGATGCTGCTCATCGTTTTCCTCCTGCTGGCGGTTTTGgttagtgtataactttcagttttg-gtactgaaagatcaccatgtgaagttgct-taattatgca-cttatgtatctgaagtgtctaaagctgtgcacgtcgggatctctatttgcag
upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G37280.1 (Glycine max), 5'ss of exon 6
GTGATGCATGCTGAAGTTGCTGAGAAGTTTGTATCCTGTGACAACCGAATACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGgtgagtacctct--ctcagacacacaaagtgaaaat-tctgcttgtgtatttatggtaaaaatttatctcatgccctgttgcttgttgcaatttacaggcaac
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GTTATGCATGCTGAAGTTGCTGAGAGGTTTATATGTAGTGGCAACCGAATATTACTTGCTGGTGATGCTGCTCATCGATTTCCTCCTGCTGGTGGATTTGgttagctgctctatctttattttgcaaatagtagatgtctactggtttaagtgaaa-aataatgtattatattactttttatct--cgcaattaattaagatg
upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G01240.1 (Glycine max), 5'ss of exon 6
GTGATGCATGCTGAAGTTGCTGAGAAGTTTGTATCCTGTGACAACCGAATACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGgtgagtacctctctcagacacacaaagtgaaaat-tctgcttgtgtatttatggtaaaaatttatctcatgcc-ctgttgcttgttgcaatttacaggcaac
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GTTATGCATGCTGAAGTTGCTGAGAACTTTATATGTAGTGGTAACCGAATATTACTTGCTGGTGATGCTGCTCATCAATTTCCTCCTGCTGGTGGATTTGgttagttgctctatctttattgcaaatcctagatgtctacttgtttaagtaaaa-aataatctgtattatattactttttatctatgcaaaata-gggcaga
upper sequence: Vv01s0010g02570.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G24340.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGATGCATGCTGAAGTTGCTGAGAAGTTTGTATCCTGTGACAACCGAATACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGgtgagtacctctctcagacacacaaagtgaaaattctgcttgtgtatttatggtaaaaatttatctcatg-ccctgttgcttgttgcaatttacaggcaac
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GTCATGCATGCTGAAGTCGCCGAGAAATTCATGTGTTGTGAGAACAGAGTGATACTTGCTGGTGATGCTGCTCACCGGTTCCCGCCTGCTGGAGGTTTTGgtacgtgttccaatatttttgaaaaggggaaccatacactgcttctttgacagttttggcatgtacgatggttataatttcggaagaaatctaatatttt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718405|gb|FC065028.1|FC065028EST: ACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTG GAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTT
genomic: ACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGgtgagtacct ... atttatgcagGAATGAATACCGGTATTCAAGATGCTCATAATCTTGCCTGGAAATTAGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGCATGCTGAAGTTGCTGAGAAGTTTGTATCCTGTGACAACCGAATACTACTTGCTGGTGATGCTGCTCATCGTTTCCCTCCAGCTGGTGGTTTTGgtgagtacctctctcagacacacaaagtgaaaattctgcttgtgtatttatggtaaaaatttatctcatgccctgttgcttgttgcaatttacaggcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggcaa