Sequence
atgc intronic sequence ATGC exonic sequenceAACAAACTCAGGGGTGTGCTGAAGGCAGCTGCTATTAAGGCTCCTGCCTTTGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAGgtagtaattgagtgctaagaataaaaatttcagtctatttcttgttaaaaatagaaaattttcgagtacagcagctagaagacatgtaaataattgatgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G09520.1 (Glycine max), 5'ss of exon 6
AACAAACTCAGGGGTGTGCTGAAGGCAGCTGCTATTAAGGCTCCTGCCTTTGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAGgtagta-attgagtgct-aagaataaaaatttcagtctatttcttgttaa-aaatagaaaattttcgagtacagcagctagaagacatgtaaataattgatgt
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AATAAACTTCGGGGTGCTCTTAAGGTAGCTGCCATTAAGGCTCCTGCCTTCGGTGAACGCAAGACCCATTACTTGGAAGATATTGCCATCTTGACTGGAGgtagaagatcaaacactcaaatttagaagcctaaatattctgtttgctgatatgttaatacaactagaaagaaaaatttctatcaggagtgaatgactga---
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G13980.1 (Glycine max), 5'ss of exon 6
AACAAACTCAGGGGTGTGCTGAAGGCAGCTGCTATTAAGGCTCCTGCCTTTGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAGgtagta-attgagtgct-aagaataaaaatttcagtctatttcttgttaaaaatagaaaattttcgagtacagcagctagaagacatgtaaataattgatgt
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AATAAACTTCGGGGTGCTCTTAAGGTAGCTGCCATTAAGGCTCCTGCCTTTGGTGAACGCAAGACACATTACTTGGAAGATATTGCCATCTTGACTGGAGgtagaagatcaaacactcaaatttagaagcttaaatatattggttgctgatgatatgttaattcaactaaaaaaaacttctgtcaggaggaatgaatgac--
upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G26230.2 (Arabidopsis thaliana), 5'ss of exon 6
AACAAACTCAGGGGTGTGCTGAAGGCAGCTGCTATTAAGGCTCCTGCCTTTGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAGgtagtaattgagtgctaagaataaaaatttca-gtctatttcttgttaaaaatagaaaattttcgagtacagcagctagaagacatgtaaataattgatgt----
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AACAAACTAAAAGGTAACCTGAAGGTGGCAGCCATCAAAGCTCCTGCTTTTGGGGAGCGCAAGAGTCACTGCTTGGATGATCTTGCAATCTTTACTGGAGgtagtca---agctccatcttcacatatggcatacaccagttttgctttgagtataattttcttattgttagt--ctgaatcactgggttattctctctgcgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349812468|gb|FQ407087.1|FQ407087EST: TGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAG GCACTGTAATTAGCGATGAGATGGGATTGACCCTGGAAAAGGCTGGCAAGG
genomic: TGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAGgtagtaattg ... tactttgtagGCACTGTAATTAGCGATGAGATGGGATTGACCCTGGAAAAGGCTGGCAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAAACTCAGGGGTGTGCTGAAGGCAGCTGCTATTAAGGCTCCTGCCTTTGGTGAGCGGAAGAGCCACTACTTAGATGACCTTGCTATCTTGACTGGAGgtagtaattgagtgctaagaataaaaatttcagtctatttcttgttaaaaatagaaaattttcgagtacagcagctagaagacatgtaaataattgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaataa