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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTTACTCTATCCAGAGTTTTGAGCGTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattcttaattccatgctaaatggtagaaagtttaatatatggtaaattttcattattaattcatggttttatacatacag

Basic information

species Vitis vinifera
transcript Vv00s0531g00050.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584049|gb|DV221063.1|DV221063
EST:     GTGGTATTTCTGCACAAAATAATGGTGGCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|77586184|gb|DV222186.1|DV222186
EST:     GTGGTATTTCTGCACAAAATAATGGTGGCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|37190107|gb|CF609456.1|CF609456
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|71877133|gb|DT026188.1|DT026188
EST:     GTGGTATTTCTGCACAAAATAATGGTGGCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|30298600|gb|CB975394.1|CB975394
EST:     GCATGGG-AATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|110376548|gb|EC941608.1|EC941608
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|110378421|gb|EC943552.1|EC943552
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|110395476|gb|EC961142.1|EC961142
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
EST: gi|110361851|gb|EC925352.1|EC925352
EST:     GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCG                         GTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT
genomic: GTGGTATTTCTGCACAAAATAATGGTGCCTTTGCATGGGAAATAATTCCGgtttgattct ... atacatacagGTTGAAGTATCTGGAGGGAGAGGAAAGCCATCTACACTTGTTGATAAGGAT