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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTGgtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtag

Basic information

species Vitis vinifera
transcript Vv00s0449g00010.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 12
GTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTGgtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtag
|| |||||||||||||||||||| || ||  |||| |||||||  || || || ||||||||||||||||  |||   ||  |  || |    | |     | |  || || || | ||  |    | |  || | ||| |||| ||      |                                                                                          
GTATTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGTTTCTGGTCACTGgtatgtttcttgctcgttaagcatatggcataa----atgtccaagtacatatttgaagaaagtcg-ttact-ttgaatcatatgctgtag------------------------------------------------------------------------------------------

upper sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 13
GTTTTAAACTTCATGTGGCTAAAGTTCTTTTTGATGTGGCGCTACTTTCGATTATGGTCACTGgtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtag
|| |||||||||||||||||||| || ||  |||| |||||||  || || || ||||||||||||||||  |||   ||  |  || |    | |     | || || || || | ||  |    |    || | ||| |||| || |    |                                                                                          
GTGTTAAACTTCATGTGGCTAAAATTTTTACTGATCTGGCGCTTTTTCCGCTTCTGGTCACTGgtatgttacttgctcgttaagcatatagcataa----atgttcaagtacatatttgaagaaagtcag-tact-ttgaatcatatgttgtag------------------------------------------------------------------------------------------