Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGGTATGAGATCAAGGACATACTTGAAATGGAAATGAAGATCTTAGAAGCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacatttcatgtttatcatctattttactgtatatgtatgtttatcttgcattccatccttaatgtgcattgtctcagcaacctctattgctttc...

Basic information

species Vitis vinifera
transcript Vv00s0360g00050.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 5
ATAGGTATGAGATCAAGGACATACTTGAAATGGAAATGAAGATCTTAGAAGCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacatttcatgtttatcatctattttactgtatatgtatgtttatcttgcattcc----atcctta-atgtgcattgtctcagcaac----ctctattgctttc--------------------
|  ||| ||| |||||||| || |||||||||||||||||| || | || || ||  |||||||||||||||| | ||| || || ||| |  | |  |||||||    |||      ||||||    |  |    | || ||| |||  |  | ||| |      ||||| || | | ||   | | || |    ||  | || | |                     
ACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAATGAAGCTCCTGGAGGCACTTGACTATTATTTAGTTGTTTACCACCCATATCGTCCTCTTTTACAgtaagattctttttccactatcatgcgatgaaaca-acat-tatctttcaccggaattaccgaagcccttatatatactttaaatgaacatcagagctgcaatggtattaacagatgctttgattttag

upper sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G408242_T03 (Zea mays), 5'ss of exon 6
ATAGGTATGAGATCAAGGACATACTTGAAATGGAAATGAAGATCTTAGAAGCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaag--tacatttcatgttta-tcatc--tattttactgtatatgtatgtttatcttgcattcc---atccttaatgtgcattgtctcagc--aacctcta-ttgctttc--------------
|| ||| ||| || ||||| || |||||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||| || ||| |  | |  |||||||  | | |||| ||| || ||     | ||||   ||  |    |   | |||   ||  |   | | || || |   ||||   |||  |||  | | ||| |                 
ATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAATGAAGCTCCTGGAAGCTCTCGACTATTATTTGGTTGTTTTCCATCCATATCGTCCTCTCTTACAgtaagaatccgtttcctgtgtaatcgctggtgttttttcgtggaacattacctttctcatatctccacagctttcatttat-ttgttctagcggaactccaagttgatagatgtcctatctgcag

upper sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 7
ATAGGTATGAGATCAAGGACATACTTGAAATGGAAATGAAGATCTTAGAAGCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacatttcatgtttatcatctattttactgtatatgtat-gtttatcttgcattccatccttaatgtgcattgtctcagcaacctctattgctttc--
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||  | ||||||| |||||| |||||| || | |||| ||||||   ||| ||    ||  | | | | |||||  | || | |   |        | ||   |        |   | | |        || |  | |   
ATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtg--tttaataaagattgttt-tctcactgttcaggttttgcacacaagagtgttcaaattatgaaaaaacaattttatttgttcatacttttctgag

upper sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G33140.1 (Glycine max), 5'ss of exon 6
ATAGGTATGAGATCAAGGACATACTTGAAATGGAAATGAAGATCTTAGAAGCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagta--catttcatgtttatcatctattttactgtatatgtatgtttatcttgcattccatccttaatgtgcattgtctcagcaacctctattgctttc--
|||| ||||| |||||||||||||||||||||||||||||||| |||||||| || || |||||  | ||||||| |||||| |||||| || | |||| ||||||    | |  |  ||  |  |  | | | | || | || |          |  ||| |    |||     |   | | |        || |  | |   
ATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGATTTTAGAAGCGCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtgtttaataaagattggttgttcactgttcagtttttgcacacaaga---gtgttcaaattataaaaaa-acaattttatttgttcatacttttctggg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110421670|gb|EC987970.1|EC987970
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|110695053|gb|EE072630.1|EE072630
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|110709326|gb|EE084688.1|EE084688
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|110364321|gb|EC923868.1|EC923868
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|161719540|gb|FC067026.1|FC067026
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|110730965|gb|EE108649.1|EE108649
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|77582414|gb|DV220179.1|DV220179
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|110713415|gb|EE089326.1|EE089326
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|32247896|gb|CD713715.1|CD713715
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
EST: gi|349814319|gb|FQ398759.1|FQ398759
EST:     GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCA                         GTTGCTTCAGGATGCCAACCTGAATGATCTAACTCAGTTATCTTG
genomic: GCTCTCAACTATTATTTAGTTGTATTCCATCCTTACCGTGCATTGTCTCAgtaagtacat ... tcctttgcagGTTGCTTCAAGATGCCAACCTGAATGATCTAACTCAGTTATCTTG