1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGAGACACACAACCTAAAGAAACAAACAATAGAGGACCAATACCAGAGGgtacgtaattagattctacaaaactctgaattcttcttcatttgtgaattaatctagtaggagcatttttgttatgaagagtgttaagtttatttttatag
species | Vitis vinifera |
transcript | Vv00s0323g00100.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAGACACACAACTTAAAGAAACAAACAATAGAGGACCAATACCAGAGG GTTAAGGTTCGGACTTCCAATCACAACACCTATAGCGTTGGATCACATGTTEST: gi|110365499|gb|EC928589.1|EC928589
genomic: TGAGACACACAACCTAAAGAAACAAACAATAGAGGACCAATACCAGAGGgtacgtaatt ... atttttatagGTTAAGGTTCGGACTTCCAATCACAACACCTATAGCGTTGGATCACATGTT
EST: TGAGACACACAACCTAAAGAAACAAACAATAGAGGACCAATACCAGAGG GTTAAGGTTCGGACTTCCAATCACAACACCTATAGCGTTGGATCACATGTT
genomic: TGAGACACACAACCTAAAGAAACAAACAATAGAGGACCAATACCAGAGGgtacgtaatt ... atttttatagGTTAAGGTTCGGACTTCCAATCACAACACCTATAGCGTTGGATCACATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGACACACAACCTAAAGAAACAAACAATAGAGGACCAATACCAGAGGgtacgtaattagattctacaaaactctgaattcttcttcatttgtgaattaatctagtaggagcatttttgttatgaagagtgttaagtttatttttatag
- - - - - - - AAAGAA
- - - - - - - - AAGAAA
- - - - - - - - - - - - - - - AGAGGA