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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatag

Basic information

species Vitis vinifera
transcript Vv00s0285g00060.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G11100.1 (Glycine max), 5'ss of exon 7
TTTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttt--------tccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatgg-ttttctgttttttactgcctcaatag
 || ||| ||||||||||||||||| || ||||||||||||||||||||   ||| |||||||| ||||| || ||||  ||||||||| ||  ||          ||  ||| | | ||| |   ||| ||||  |  ||  || |  ||| |   |  | ||||   |  || | ||| | | ||   ||||||||| |||  ||  | |    
ATTATCCTGTCTATCACACTGCTTTCGATTCCTATAACTGGATGACAAAGTTTGGAGATCCATTCTTTCAGCGCCATGAAGCTGgttagatttcttgtttaaccctctcttagcaagaatttt--gaaatgattattttatagaccaataaa-ttgttcatccatttgtaaatcat-aagatgatatatcttttctgttctttgttgtattag---

upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 6
TTTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatag
 |||||| |||||||||||||| || |||||||||||||||||| || |  |||| |||||||| || || || ||||| ||||||||| ||  |   ||| || ||||  ||    |     |||| |  |||||||  | |||||  ||   ||  ||||        |   |  |   |||||||| ||||  ||   ||    
ATTTTCCCGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttct---cttttaatatggtttaaaaatgtttattttttaatgaact--gtaaatccatgtgaca--gtca-------gaagatgta-aattttctgtgttttgttgtaacag---

upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 6
TTTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttag-cttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatag
 |||||| |||||||||||||| || |||||||||||||||||| || |  |||| |||||||| || || || ||||| |||||||||  |||| ||     |  |    ||  || | ||   | |||        |  |  ||    |  | ||| ||  |      ||| |   |   ||||||||| |||  ||    |||||
ATTTTCCCGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGgttagatttctcttttaattgcttaatatggtttacaagtctctatt------tttagtgaactgttaatccat-gtggcagtcataagatgtaac--ttttctgttctttgttgt---aatag

upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G23220.1 (Glycine max), 5'ss of exon 7
TTTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttcct----tct---agtatgcattcttgaaaaag-atttatcgatgaactag--gaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatag
 ||| ||  ||||||||||||| || |||||||||||||||||| || |  || | |||||||| || || || |||||  |||||||| || || |  |    | |   ||| |  ||| || |  ||   |  ||| |||    ||    ||     | |||   |||   || ||  | ||      ||||   |  || ||            
ATTTCCCCATCTATCACACTGCGTTCGACTCCTATAACTGGATGGCATAGTATTGAGATCCATTCTTCCACCGCCATGTTACTGgttagatttttcttttatggtttaaaagtttctatttttaatgaactgtaaatccatgtgacagtcataagatgttacttttctgttctttgttgtaactgttggagtttgggggcttgtag-----------

upper sequence: Vv00s0285g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G54720.1 (Arabidopsis thaliana), 5'ss of exon 6
TTTTTCCAGTCTATCACACTGCTTTTGACTCCTATAACTGGATGACAAACCATGGGGATCCATTGTTTCAACGTCATGTGGCTGgttagcttcttttccttctagtatgcattcttgaaaaagatttatcgatgaactaggaaaatcactgcttcattgtcacttcttcaagcttacatggttttctgttttttactgcctcaatag
 || ||| |||||||||||||| |||||||||||| | |||||||   || | |  |||||||||||||| |||||||| ||| || |   | |      |||  | || ||   | |  |   ||||   ||    |  |    |||  | |    ||       ||||  ||  |    || | || ||| ||     | |  ||
ATTATCCTGTCTATCACACTGCATTTGACTCCTATGATTGGATGATCCACAACGCAGATCCATTGTTTCACCGTCATGTTGCTAgtaaagatttcacttctctcttttg-atctattattatcttttagttatttgttctgtttttcatggatgttatgaagagaattcactctctc----ttctttgctttctata--tttatcag