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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactgtactagttagtggtgattttgataggtataatggtgatatatcagttttattcatagttgttgactcaggaaa...

Basic information

species Vitis vinifera
transcript Vv00s0283g00020.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 6
CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactgtactagttagtggtgattttgataggtataatggtgatatatcagttttattcatagttgttgactcaggaaa
|||| |||| ||||||||||||| ||| |||||||||||| | || ||||||||||| || ||||| |||||||| ||||| |||||||| ||||| |||||||  |||        || |   |||| |   ||  |      |||  || | ||     | ||       |||  || | | | |             
CATGGAAGGAATTGTTGAGCAGGCTCGCGATGGCAGTACCCTACGCGTCTATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatatatc--------ataaatgctgttcctatttctacc--ctttcctaagcatgcaaataat----tgttttcctttaaattag-------------

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 6
CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactgtactagttagtggtgattttgataggtataatggtgatatatcagttttattcatagttgttgactcaggaaa
|||| |||| ||||||||||||||||| |||||||||||| | || ||||||||||| || || || |||||||| ||||| |||||||| ||||| |||||||  ||       |||| |   ||||     ||  |     |||  |    |  ||       |||   |||||  |   | ||              
CATGGAAGGAATTGTTGAGCAGGTTCGCGATGGCAGTACCCTGCGTGTCTATTTGCTCCCAGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatgtatata----tcataaatgctgtttctatttctacccttttctaagcatgcaa-------ataatggttttcctttaaattag------------

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G17050.4 (Glycine max), 5'ss of exon 6
CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactg-tactagttagtggtgattttgataggtataatggtgatatatcagttttattcatagttgttgactcaggaaa
|||| | |   |||||||||||||||| |||||||||||  ||||  |||||||||| || || || |||||||||||||| |||||||| ||||| |||||||   ||   |  |  |    | || || | | ||  |    | || | |  |  |       | | | |  ||||  |  ||                
CATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGAATCTATTTGCTCCCGGAGTTTCAGTTTGTTCAAGTTTTTGTTGCTGGAATTCAGgtatgtgtcaaatgct-gttgctattgctatttgctaccgtctttattcacacatgcagcta-attgttttacctttaccc-cag----------------

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 6
CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactgtactagttagtggtgattttgatag-gtataatggtgatatatcagttttattcatagttgttgactcaggaaa
|||| | |   |||||||||||||||| |||||||||||  ||||  |||||||||| || || || |||||||| ||||| |||||||| ||||| ||||||| |  ||   ||   |    | ||  ||| ||  |      |||  | |   ||   | | ||   |     ||   |  ||                
CATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGTATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtat-gtgccaaattctgttgctattg--ctatttgctaccatctttattcgcacatgcagctaattgttttacctttaccgcag----------------

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 6
CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtat-tgatccgcttttc--atcagcactgtactagttagtggtgattttgata----ggtataatggtgatatatcagttttattcatagttgttgactcaggaaa
|||| |||||||||||||||| || || |||||||| ||||| ||||| ||| | ||||| ||||| |||||||||||||| |||||||| ||| ||||||||| | |||   ||| |   |    ||||    ||  ||| |  ||||| ||     ||| |||  ||| |  |  | |||| |   |||                
CATGGAAGGTATTGTTGAGCAAGTCCGTGATGGCAGCACCATTCGGGTTTATCTTCTTCCGGAATTTCAGTTTGTTCAAGTATTTGTTGCTGGACTCCAGgtatgttatcttgtttccttgtttttactgcgtgagg-agttgacattttaatttcatggtgtaagagtgctgga--aattttctatgtag----------------

upper sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 6
CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactgtactagttagtggtgattttgataggtataatggtgatatatcagttttattcatagttgttgactcaggaaa
 ||| |||||||||| ||||| || || ||||| ||||| || ||||| ||| | ||||| || ||||||||||| ||||| |||||||| ||| |||||||||  |  |   ||||        ||    |   |  | | |  ||   |  ||| |   ||| | |     || |   ||| || |      | | | 
TATGGAAGGTATTGTAGAGCAAGTGCGTGATGGAAGTACTATTCGGGTTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGgtatctaaacttgtttctcagttcttgctgcatgcaaggttaacgttttaacctatcactttgaaacaca---ttcagcaatatttctctttcaatgtag