Sequence
atgc intronic sequence ATGC exonic sequenceGTCAACATCAGAAGCGTCGATGAGGCTGTAGTGATTGGTGCTGCTCTTTCATTGTCTTCTTCAGCTTTTGTGTTGCAGgtattctaattctagacatctaagaacgattttataaatgaaatatttgtttcccattagctgacaatggcacctcaacatgtttgcataataaataaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 6
GTCAACATCAGAAGCGTCGATGAGGCTGTAGTGATTGGTGCTGCTCTTTCATTGTCTTCTTCAGCTTTTGTGTTGCAGgtattc--taattctagacatctaagaacgatttta--taaatgaa-atatttgtttcccattagctgacaatggcacctcaacatgtttgcataataaataaaa
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GTGAACATCAGAAGTGTCGATGAAGCTGTAGTGATTGGTGCTGCTCTCTCTCTGTCATCTTCTGCATTTGTTTTACAGgtatttgtttattttgaatgtctatttataattgaagataaacaaggataatttctgcacctt-gtttacatgaaagacacaaagacaatgt-tgatgcatc---
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 7
GTCAACATCAGAAGCGTCGATGAGGCTGTAGTGATTGGTGCTGCTCTTTCATTGTCTTCTTCAGCTTTTGTGTTGCAGgtattctaa--ttctagacatctaagaacgatttta--taaatgaaatatttgtttcccattagctgacaatggcacctcaacatgtttgcataataaataaaa-
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GTGAACATCAGAAGTGTTGATGAAGCTGTAGTGATTGGTGCTGCACTCTCTCTGTCTTCTTCTGCATTTGTTCTACAGgtatttgtgtgttttgaatgtctatttaaaattgaagataaacaaggactatttctgcaccttgtttgcaaaaaag-----acatgatgacaatgttgatgtatc
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 6
GTCAACATCAGAAGCGTCGATGAGGCTGTAGTGATTGGTGCTGCTCTTTCATTGTCTTCTTCAGCTTTTGTGTTGCAGgtatt--ctaattctagacatctaagaacgattttataaatgaaatatttgtttcccattagctgacaatggcacctcaacatgtttgcat-aataaataaaa---------
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GTCAACATTAGAAGCATTGATGAGGCCGTTGTCATTGGCGCTGCTCTATCATTGTCATCTTCAGCTTTTGTTCTACAGgtattagcacagttgcaataacttttagtcatct-atatctagaatggtaatggagaggcaaactcaatcaagaatttagtacattcttattgacaattttgaaatgtatag
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S16_337V6.1 (Physcomitrella patens), 5'ss of exon 6
GTCAACATCAGAAGCGTCGATGAGGCTGTAGTGATTGGTGCTGCTCTTTCATTGTCTTCTTCAGCTTTTGTGTTGCAGgtattctaattctagacatctaagaacg------attttataaatgaaatatt--tgtttcccattagctgacaatggcacctcaacatgtttgcataa--taaataaaa---------------------------------------------------------------------------
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GTGAATATTAGAACGGTGGATGAAGCGGTGGTGATTGGTGCTGCTCTTTCGCTGTCGTCGTCAGCTTTTGTGCTGCAGgtttgctactcctttccattagatcgtgcacctcgcttcggtactgaaaaatgaacgaagctcttttctagatggttcgacctcccgatctccgcacaacgtgaatattggcataaatttggtcacgaaatagacacttctttaaatggaagagtagattaatgtgaggcctttcatgtacgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706912|gb|FC056800.1|FC056800EST: TAGTGATTGGTGCTGCTCTTTCATTGTCTTCTTCAGCTTTTGTGTTGCAG CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTG
genomic: TAGTGATTGGTGCTGCTCTTTCATTGTCTTCTTCAGCTTTTGTGTTGCAGgtattctaat ... caatatatagCTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAACATCAGAAGCGTCGATGAGGCTGTAGTGATTGGTGCTGCTCTTTCATTGTCTTCTTCAGCTTTTGTGTTGCAGgtattctaattctagacatctaagaacgattttataaatgaaatatttgtttcccattagctgacaatggcacctcaacatgtttgcataataaataaaa
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa