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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGAGCCCTTGTTGAAACCACTAGAGGAATTGAAGGCGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatcatggattgtacttttgctttcttatctaattctattgataactaataacacactgcttacaagtttggctaatttgaagaattttattcacttcttttcaaattacag

Basic information

species Vitis vinifera
transcript Vv00s0233g00030.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G14780.1 (Glycine max), 5'ss of exon 6
TTTTAGAGCCCTTGTTGAAACCACTAGAGGAATTGAAGGCGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatca--tggattgtactttt-gctttcttatctaattctattgataactaataacacactgcttacaagtttggctaatttgaagaattttattcacttcttttcaaattacag
|||||||  ||| || || |  |||| ||  ||  |||| ||||||||||| || || |||||||| |  ||||| ||||||||||||||||| |||||||||||  |    || ||    | |   |  ||  |||||  || |      ||  | |  || | | |||     |||   | | || | ||| |  |                      
TTTTAGAATCCTCGTAGAGATTACTAAAGATATACAAGGAGCAAAAGTTGAAAATCACAAGTTTTGTGTTTCTGTGCATTACCGTAATGTAGAAGAGAATgtaagtgttggttgcatcaaccatgaagagttgatatctttttttcacctcaatcattt-cataat-ctttttttttttttttacttaatgaactgcag---------------------

upper sequence: Vv00s0233g00030.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 7
TTTTAGAGCCCTTGTTGAAACCACTAGAGGAATTGAAGGCGCAAAAGTTGAGAACCATAAGTTTTGCGCCTCTGTACATTACCGTAATGTAGATGAGAATgtaaggatcatggattgtacttttgctttcttatcta-attctattgataactaataacacactgcttacaagtttggctaatttgaagaattttattcacttcttttcaaattacag
||||||| |||||||||| |  |  | ||  ||  |||| |||||||| |||||||| ||||| || || ||||||||||||||||| || || || || ||||  |  |   |  |  || |||  || |  | |  | | |  | |    | |||  | | || |||   ||||   ||                                     
TTTTAGAACCCTTGTTGAGAAAATGAAAGATATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACGTTGACGAAAAGgtaacaaaaacaaaaagacctattgaattttgctttgtactttgataaattttgatacaaaaatgtttat--gtttctttag------------------------------------