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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggccttttctaagttggatttgcaagcatgattctccaacaagtttcttcttcgtcatttccttttcttttttctcttatctctggttacaccaagggtgcttgtgttccaaagccattcccatatatctattgactattacctgtgtattgcaag

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349817756|gb|FQ407745.1|FQ407745
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351019694|gb|FQ439511.1|FQ439511
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351026306|gb|FQ428318.1|FQ428318
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|33409277|gb|CF214904.1|CF214904
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|110389517|gb|EC954364.1|EC954364
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351029331|gb|FQ436725.1|FQ436725
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349816294|gb|FQ399404.1|FQ399404
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351013592|gb|FQ429733.1|FQ429733
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|56408495|gb|CX016747.1|CX016747
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|352781104|gb|FQ466417.1|FQ466417
EST:     AAGGAGTAATGCAGATTTTGAATACCATTATCCCTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCT
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCT
EST: gi|351049118|gb|FQ428982.1|FQ428982
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351036343|gb|FQ458718.1|FQ458718
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351036202|gb|FQ464047.1|FQ464047
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|110692196|gb|EE071162.1|EE071162
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|29785300|gb|CB342168.2|CB342168
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGNG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349827710|gb|FQ422578.1|FQ422578
EST:     AGGAGTAAATGCAGATTTTGAATACAATTATCCGTGGTGAAA----TGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AGGAGTAA-TGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351018395|gb|FQ439207.1|FQ439207
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|161712960|gb|FC062086.1|FC062086
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349819777|gb|FQ404499.1|FQ404499
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|27755408|gb|CB036163.1|CB036163
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCA
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCA
EST: gi|27755104|gb|CB035859.1|CB035859
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349833249|gb|FQ416627.1|FQ416627
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|27582523|gb|CB005218.1|CB005218
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349807317|gb|FQ401309.1|FQ401309
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|29785236|gb|CB342047.2|CB342047
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|71856263|gb|DT005318.1|DT005318
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|77584537|gb|DV221338.1|DV221338
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349808113|gb|FQ403300.1|FQ403300
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|27578703|gb|CB001398.1|CB001398
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|110689868|gb|EE066470.1|EE066470
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351049355|gb|FQ429098.1|FQ429098
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCANCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351048786|gb|FQ449654.1|FQ449654
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCACCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|71861897|gb|DT010952.1|DT010952
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTC
EST: gi|351040447|gb|FQ434580.1|FQ434580
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|161706058|gb|FC056227.1|FC056227
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351046382|gb|FQ452998.1|FQ452998
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349820046|gb|FQ404768.1|FQ404768
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349808629|gb|FQ405773.1|FQ405773
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349809424|gb|FQ411922.1|FQ411922
EST:     AAGGAGTAATGCATATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349821055|gb|FQ404308.1|FQ404308
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|30251568|gb|CB969301.1|CB969301
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|18459105|gb|BM437383.1|BM437383
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGNCTGCA-TATCTCT
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAG-CTGCAATATCTCT
EST: gi|32250126|gb|CD715945.1|CD715945
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|27578701|gb|CB001396.1|CB001396
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349808686|gb|FQ405830.1|FQ405830
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349821509|gb|FQ408068.1|FQ408068
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349830529|gb|FQ416839.1|FQ416839
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTTGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|110707090|gb|EE083187.1|EE083187
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351012478|gb|FQ427079.1|FQ427079
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|352794077|gb|FQ479319.1|FQ479319
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|71857816|gb|DT006871.1|DT006871
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGTAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351029614|gb|FQ427454.1|FQ427454
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349811946|gb|FQ410743.1|FQ410743
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351029308|gb|FQ436702.1|FQ436702
EST:     GGAGTAAATGCAGATTTTGAAATACAATTATCCCTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACCTCAGCTGCAATATCTCT
genomic: GGAGTAA-TGCAGATTTTGAA-TACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTAC-TCAGCTGCAATATCTCT
EST: gi|30127296|gb|CB912635.1|CB912635
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|352769573|gb|FQ468501.1|FQ468501
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|349832657|gb|FQ422015.1|FQ422015
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCCGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|30251605|gb|CB969338.1|CB969338
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351024976|gb|FQ433393.1|FQ433393
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|110698273|gb|EE075615.1|EE075615
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351032478|gb|FQ458843.1|FQ458843
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|71874947|gb|DT024002.1|DT024002
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
EST: gi|351054831|gb|FQ462861.1|FQ462861
EST:     AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGG                         ATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC
genomic: AAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggcct ... gtattgcaagATTTTGGTTCCTGTCCCACAATATCCGCTTTACTCAGCTGCAATATCTCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATCCAGAGCTCATATTTCTCACGGATGGTGCCAGCAAAGGAGTAATGCAGATTTTGAATACAATTATCCGTGGTGAAAGGGATGGGgtaatggccttttctaagttggatttgcaagcatgattctccaacaagtttcttcttcgtcatttccttttcttttttctcttatctctggttacaccaagggtgcttgtgttccaaagccattcccatatatctattgactattacctgtgtattgcaag

- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAGAT