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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgactttcatctagagttccctgctagatataccagtgctttccatcttctcagtggctgtctattttgacttattagccatgggaaaaaaat...

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgact-------ttcatctagagttccctgctagatataccagt--gctttccatcttctcagtggctgtctattttgacttattagccatgggaaaaaaat
 ||||| || || || ||||||||||| ||||| ||| | ||||| ||||| |||||  | ||||||||||||||||||||||||||||| ||||| ||||| | |  | ||       |||||       |  || |||| | |  ||||  || | | | | |     |  ||  ||  ||    || || | | |           
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca---------

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G135283_T01 (Zea mays), 5'ss of exon 6
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgact---ttcatctagagttccctgctagatatacc--agtgctttccat---cttctcagtggctgtctattttgacttattagccatgggaaaaaaat
||| || || || || || ||||||||||| || ||  | |||||||| || |||||  | ||||||||||| |||||||||||||||||||| || ||||| | |  | ||    |   || |     ||  |||  | ||      ||||   ||    | |    ||  |  ||| | ||| |||  |  || |           
GCCCGCCAACTTCCATGTATACACTGCACTCTTGAAGCCACATGAAAGGATCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggtctggagtttccttgtacctccaactatttttattttgatgctgcacacaagcatggatgtttccttctctgttgcctttctttcctttct--------

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 7
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga--------ctttcatctagagttcc--ctgctagatataccagtgctttccat-------cttctcagtggctgtctattttgacttattagccatgggaaaa--aaat-------------------------------------------------------------
 ||||||||||| || || ||||||||| |  | ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||        ||| || |     || |  ||  ||   | | |  |  | |  ||        ||   | |   ||||| ||||   ||  || |  |   || |   | |                                                             
TCCTGCAAATTTCCATGTCTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCATGGATATCAGgtacttttgaagtttgaacttccaccattcatttcatcttataatcaaatctatagtgtgtatatggctatttaataattattgtcttttttattttgatatcttttcaaagattgagtagaccttggggtcattaatgaaaaattatactcgtttaatattgctgctataactacgcag

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 6
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgactttcatctagagttccctgctagatataccagtgctttccatcttctcagtggctgtctattttgacttattagccatgggaaaaaaat---
 ||||||||||| || |||||||||||| |  | ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| |||   | ||| | ||    |       |  || |   | ||   |  |   | | ||||  ||| |||    | ||| ||   || |       ||   
TCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaagtttgaacttccatcattcatttcatcttataatgaaatgaaatctgt-agtg--tgtatatggctatttaataattattgtctttttatttt

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G33480.1 (Glycine max), 5'ss of exon 6
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgactttcatctagagttccctgctagatataccagtgctttccatcttctcagtggctgtctattttgacttattagccatgggaaaaaaat--
  |||| ||||||||||||||||||||| |  ||||| ||||||| ||||| |||| ||||||||| || ||||| || |||||||||||||| || |||||  |    | | ||| ||  | |       |   | |   |  |   || ||      |||   |    | |||||  ||| |    |  || || | |  
TTCTGCCAATTTTCAAGTTTACACTGCATTGCTAAAACCTCATGATAGAATCATGGGACTTGATCTACCACATGGAGGGCATCTTTCTCATGGATACCAGgtattatcaagtatcaacttcaatcattcatttcctgttataaagaaatctatacgtgtagtttattggaaatttga--tatcaatattctgataatatttt

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 6
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtg------cttatgactttcatctaga--gttccctgctagatataccagtgctttccatcttctcagtggctgtctattttgacttatt-agccatgggaaaaaaat------------------------------------------------------
 || || |||||||| || ||||| || || |||||  | || ||  | || |||||  | ||||||||||||||||| ||| | |||||||| |||||||||      || || |  |  | ||  |   |    ||| |       ||| || |    | || |     ||||   |   |  |||||| |   |||   |    ||                                                      
CCCAGCCAATTTTCAGGTCTACACAGCTCTCTTAAAGCCACACGAGCGCATAATGGCCTTAGATCTTCCTCATGGTGGTCATTTGTCTCATGGATATCAGgtgtgattcctaataaactctacctgtaccatcttttgccactcgcctcagagcgtcaattattatgtaccgctgctaaagatagcttatttatttatgtatagctgatgttttctccacttgccttacatctactggctctgttgtctgacatggtaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351018888|gb|FQ425790.1|FQ425790
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACCACCA-GAAAATATCTGCAGTGTC
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGAC-ACCAAGAAAATATCTGCAGTGTC
EST: gi|27579405|gb|CB002100.1|CB002100
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351025653|gb|FQ426667.1|FQ426667
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352763949|gb|FQ465399.1|FQ465399
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATNTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352768598|gb|FQ467810.1|FQ467810
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|110727742|gb|EE104853.1|EE104853
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351052991|gb|FQ456598.1|FQ456598
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATACCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351036425|gb|FQ457138.1|FQ457138
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATACCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351042407|gb|FQ442874.1|FQ442874
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATACCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351018926|gb|FQ426425.1|FQ426425
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|349822117|gb|FQ412381.1|FQ412381
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAC                         ACCGACATCAAGAAAATATCTGCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCA
EST: gi|351055450|gb|FQ442048.1|FQ442048
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATACCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|29785435|gb|CB342421.2|CB342421
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAGAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352786291|gb|FQ478902.1|FQ478902
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352772603|gb|FQ472078.1|FQ472078
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351049398|gb|FQ449999.1|FQ449999
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATNTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352781312|gb|FQ467758.1|FQ467758
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352773363|gb|FQ470950.1|FQ470950
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCCACACCAAGAAAATATCTGCAGTG
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTG
EST: gi|352769306|gb|FQ471455.1|FQ471455
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352781111|gb|FQ466424.1|FQ466424
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352776558|gb|FQ474860.1|FQ474860
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCCAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351054819|gb|FQ462849.1|FQ462849
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|110719906|gb|EE095430.1|EE095430
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCGG                         AACGACACCAA-AAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351026152|gb|FQ428164.1|FQ428164
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351016274|gb|FQ446134.1|FQ446134
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351022606|gb|FQ447128.1|FQ447128
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATATTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351045470|gb|FQ440655.1|FQ440655
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352777763|gb|FQ466816.1|FQ466816
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACCTCTTTCTCATGGCTATCAG                         ACCCACCCCAAGAAAATATCCGCAGTGTCTATATTTTTTGAGA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGA
EST: gi|352781814|gb|FQ469112.1|FQ469112
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352777749|gb|FQ466802.1|FQ466802
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352768544|gb|FQ467500.1|FQ467500
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352763990|gb|FQ467560.1|FQ467560
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAC                         ACCGAACACCCAA-AAAATAT
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGA-CACC-AAGAAAATAT
EST: gi|352774203|gb|FQ474726.1|FQ474726
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352782191|gb|FQ470093.1|FQ470093
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352769465|gb|FQ471614.1|FQ471614
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGAACACCAA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGA-CACCAA
EST: gi|352777353|gb|FQ473987.1|FQ473987
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAA                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGA
EST: gi|352768409|gb|FQ469585.1|FQ469585
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352781785|gb|FQ469083.1|FQ469083
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCCATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352768239|gb|FQ469414.1|FQ469414
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCCGTGT
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGT
EST: gi|352781462|gb|FQ468306.1|FQ468306
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|32250119|gb|CD715938.1|CD715938
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGACTATCAG                         ACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351038704|gb|FQ464570.1|FQ464570
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATACCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352772664|gb|FQ472139.1|FQ472139
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|351036770|gb|FQ457483.1|FQ457483
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352773662|gb|FQ472444.1|FQ472444
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAAAATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|30299931|gb|CB976725.1|CB976725
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACTGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352769660|gb|FQ468588.1|FQ468588
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352780985|gb|FQ466298.1|FQ466298
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|352789755|gb|FQ478570.1|FQ478570
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
EST: gi|349823773|gb|FQ415184.1|FQ415184
EST:     TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAG                         ACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA
genomic: TTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatga ... tattgtgcagACCGACACCAAGAAAATATCTGCAGTGTCTATATTTTTTGAGACAATGCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgactttcatctagagttccctgctagatataccagtgctttccatcttctcagtggctgtctattttgacttattagccatgggaaaaaaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa