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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTCTAGTGGAGATTTGGATAATACGGAAATTATTGGCCAAATCCTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaacttataatgttttttttggagaaaacatctccttcataggtttactgaaatactgttttatcag

Basic information

species Vitis vinifera
transcript Vv00s0211g00060.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G02480.1 (Glycine max), 5'ss of exon 6
TGCCTCTAGTGGAGATTTGGATAATACGGAAATTATTGGCCAAATCCTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaacttataatgttttttttggagaaaacatctccttcataggtt--tactgaaatactgttttatcag--------
||| ||||||||||||||||||||||| | ||| ||||  |||||  | ||||| |||||||||||||| ||||||||    |||| ||||||||| |||||||||  | ||| || | | ||   |||| |||  |   | |||||||  || |||  || ||| | |||          
TGCATCTAGTGGAGATTTGGATAATACAGGAATAATTGATCAAATTTTAAAGCTAAGGTTGGAAAAGGCCAAGCTTCTAAACTACAATAACTATGCCGAGgtatga-ttcata-tgctatatt--aagaatacaatttagttataggttgctaatgacctaatgtataatcgatctttcag

upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 6
TGCCTCTAGTGGAGATTTGGATAATACGGAAATTATTGGCCAAATCCTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaacttataatgttttttttggagaaaacatctccttcataggtt--tactgaaatactgttttatcag--------
||| ||||||||||||||||||||||| | ||| ||||  |||||  | ||||| |||||||||||||| ||||||||    |||| ||||||||| |||||||||  | ||| || | | ||   |||| |||   |  |  ||| ||  || |||  || ||| | ||           
TGCATCTAGTGGAGATTTGGATAATACAGGAATAATTGATCAAATTTTAAAGCTAAGGTTGGAAAAGGCCAAGCTTCTAAACTACAATAACTATGCCGAGgtatga-ttcata-tgctatatt--aagaatacaatccggttgtagattgctaatgacctaatgtataattgatctttcag

upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G10540.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCCTCTAGTGGAGATTTGGATAATACGGAAATTATTGGCCAAATCCTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaacttataatgttttttttggagaaaacatctcct--tcataggtttac-tgaaatactgttttatcag-----
|||||||   || ||||| |||||||| | |||||| | ||||||| |||||||| |  |||||||||||||||||||||||||||| || ||||| |||||||     |||| | |  |   |  |   |   ||   |  |||| || |||  |  ||||   || |    |     
TGCCTCTTCGGGTGATTTAGATAATACAGCAATTATCGACCAAATCTTGAAGCTTCGACTGGAAAAGGCTAAGCTTCTTGGTTACAGAAATTATGCTGAGgtat-----tatagtctactaagtcaacttactctcctttactcatgggcttaaatttaatatcattctccttgtccag

upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCCTCTAGTGGAGATTTGGATAATACGGAAATTATTGGCCAAATCCTGAAGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaacttataatgttttttttggagaaaacatctccttc--ataggtttactgaaa--tactgttttatcag
|||||||  ||| |||||||||||||||| |||||||| ||| ||  |||||||| | |||||||| |||||||||||||||||||  || || || |||||| ||      ||  |   |      |      | || |||  || || ||| ||  |  | ||  | |   ||
TGCCTCTTCTGGCGATTTGGATAATACGGCAATTATTGACCAGATTTTGAAGCTTCGCTTGGAAAAAGCTAAGCTTCTTGGTTACAACAATTACGCTGAGgta-gagtcatcaacctaagtaaaactgttcttttttctttctaattggcttaatgcgactttctactgttctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723244|gb|EE100338.1|EE100338
EST:     AGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAG                         GTAAGTATGGCAACCAAAATGGCTACTGTTGATAAAGCAGAAGAGCTTCTA
genomic: AGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaactt ... gttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTA
EST: gi|110732181|gb|EE107245.1|EE107245
EST:     AGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAG                         GTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTA
genomic: AGCTTAGGTTGGAAAAGGCTAAGCTTCTTGGTTACAGTAACTATGCAGAGgtatgaactt ... gttttatcagGTAAGTATGGCAACCAAAATGGCTACTGTTGATAAGGCAGAAGAGCTTCTA