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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag

Basic information

species Vitis vinifera
transcript Vv00s0207g00150.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os07g03140.1 (Oryza sativa), 5'ss of exon 5
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgatt-aaactatgaa-----atttgcaggga----taccttgtttaaa-agtttctaatgtgaaatgataatgataagagcttcttactctttgaacag
 | | || | | ||| || ||     | |||||||| |  |||| | |||| |||||||| || ||||||||||||||||| || |||||| |||||||||||||| ||| |||   || ||| |||| |     | ||| |        |    ||  ||   | | ||| | ||   |  ||||||| ||  |   || |||     |    
GTTAATTTTGTATCGGTTGGAGACCATTGATCTGAGAAGAATGACAAATGATGAAAAGATTGCTTTCTGGATCAACATACACAACGCATTGTTGATGCATgtaatgttccttctcatttcaaattatgcacagtgaattgtaactgctactgttctgcctactcattctctgaagtctgaatataatgacaattggcactaacttccacag---

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM5G843914_T01 (Zea mays), 5'ss of exon 8
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttctt--actctttgaacag
 |   || | | ||| || ||||  || ||||||||||  |||| | |||| |||||||| || |||||| |||||||||| ||||| ||| |||||||||||||  || |   |||||  | |  |       ||   ||  ||||       |    | | |||   || |  ||||  |  |   ||  | |  ||  ||||
GTTGATTTTGTATCGGTTGGAAGCCGTTGATCTGAGGAGAATGACAGATGAAGAAAAGATCGCATTCTGGGTCAACATACACAATGCTTTGCTGATGCATgtaatactctac--tgattgtagttcgc------caaaaatttcttg-------gcacttgacgtgctttgttcttgatggggtcccattgtaatactttcacag

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G052476_T02 (Zea mays), 5'ss of exon 8
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgat-ccatcttgattaaactatgaaatttgcagggataccttg---tttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag
     || | |  ||  | ||||  || |||||||||| |||||   | || |||||||||||||||||| | ||| |||| ||||| ||| |||||||||||||  | |  | ||| |  | ||| |   ||  ||   ||  |||     || |  | ||      |||     | |||       | |   | |  ||   |||
GCTGGTTTTGTACCGGCTGGAAGCCGTTGATCTGAGGACGATGACGAACGAAGAAAAGATAGCGTTCTGGGTGAACGTACACAATGCCTTGCTGATGCATgtaatactactctattggtgtagcta-gcttttgccaaaaatttcttaccactttacggctttgttcttgatggcctgatggggtcttcgttgcaatgctttcgcag

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G469304_T01 (Zea mays), 5'ss of exon 5
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag
 |||||| |    |   | |||   || ||||| ||   |||||||||||| || ||| | || |||||||||||| | ||||||||  || ||||||||||||  ||     |    | | |   || |||   |     ||| |        |    |    |   ||   || | |    | || ||  | |  |     
GTCACTTGTGCAGCTTCTCGAAAGCGTTGATCTCAGCGGGATGAAACATGAAGAGAAGCTCGCTTTCTGGATCAACGTGCATAATGCGATGATGATGCATgtaactattttcttgccctgatcctcgatattcttaa----accgtaccggcgggccgatgggtttcgatctaaacgtttgatgtttttttttgtcag-----

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G25820.1 (Glycine max), 5'ss of exon 6
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag
|||||||||||||| |||||||||||| ||||   ||||| ||||||||||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||||| ||   |  |    ||||    |||||| |    ||   || |  |    |||||  ||    | | | || ||| |  ||| ||    ||  || ||
ATCACTTATTTCTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAACATGAGGAGAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattattattactctcaaaac----aaatttccctttattagttttcca----tttctcttgattga-ggttataatatgctcttttttggtttctaatag

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G06790.1 (Glycine max), 5'ss of exon 7
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag
 |||||||||| || |||||||||||| ||||   ||||| ||||| | ||||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||||| ||  |||    | |||  |  |  ||| |     |   || ||  || | |   | |       | | || ||| |   || ||    ||  || ||
GTCACTTATTTGTCAATTAGAAGAAGTAGATCCTGGGAAGTTGAAAAACGAGGACAAGTTAGCTTTCTGGATCAACATACACAATGCTTTGGTGATGCATgtaattatt-atcactctcaaa--acaatgtttccctttcttagtt-ttccaatgctctcacttcattgaggttataatatg---tttttgggtttctaatag

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G38680.1 (Glycine max), 5'ss of exon 9
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgataatgataagagcttcttactctttgaacag
 |||||||||| ||||||||||||||| || |   | | | ||||||| ||||| |||||||| || |||||||||||||| ||||| || ||||||||||||||     || ||  |   |  | ||| | |||     ||   |  ||     || | | |     |      | ||||    |||||    ||  || ||
GTCACTTATTTGTCGATTAGAAGAAGTAGACCCCGGCAGGTTGAAACACGAGGAGAAGATAGCTTTTTGGATCAACATACACAATGCTTTAGTGATGCATgtaatttattattttact---atcaagaa-tatgcttctgtataatactttcccattcccatttgattagttgggttataatttgttcttttgtttctaatag

upper sequence: Vv00s0207g00150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G06610.1 (Glycine max), 5'ss of exon 3
ATCACTTATTTCTCGATTAGAAGAAGTGGATCTGAGGAAGATGAAACATGAGGAAAAGATAGCGTTCTGGATCAACATACATAATGCATTGGTGATGCATgtaatgatccatcttgattaaactatgaaatttgcagggataccttgtttaaaagtttctaatgtgaaatgata-atgataagagcttcttactctttgaacag
 |||||||||| ||| ||||||||||| || |   | | | |||| || ||||| |||||||| || |||||||||||||| ||||| || ||||||||||||||      |  | |||| ||||| ||   |     | | |  |||  | |  ||||  || |||   | |   | ||||    ||||| |  ||  || ||
GTCACTTATTTGTCGGTTAGAAGAAGTAGACCCCGGCAGGTTGAAGCACGAGGAGAAGATAGCTTTTTGGATCAACATACACAATGCTTTAGTGATGCATgtaat------ttattattatactatcaagaatat---gtttcagtgta-atatttttcccatttgattagttgtgttataatttgttctttcgtttctaatag