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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGTTGGCTGAGGCTGAGGCTGCAGTTGAGGCTCGCAAGAAACCACCAGAAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaatcatcttgtgaatttgattatatttctcataaaattttgttcatataaatggttttcatcatatcctactctattctgcttttccag

Basic information

species Vitis vinifera
transcript Vv00s0203g00040.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os07g37270.1 (Oryza sativa), 5'ss of exon 6
CCAGTTGGCTGAGGCTGAGGCTGCAGTTGAGGCTCGCAAGAAACCACCAGAAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaatcatcttgtgaatttgattatatttctcataaaattttgttcatataaatggttttcatcatatcctactctattctgcttttccag
 |||||||||||||||||||||||| |||||||  | |||||||| || |||||    || |||| |||| |||| ||||| |||||||| |||||||||||  |    || ||  || | | ||  | |   |||    |   ||||||| | |   | |||      | ||||| |   ||       |  |||
TCAGTTGGCTGAGGCTGAGGCTGCACTTGAGGCAAGAAAGAAACCTCCTGAAGAGAATGGCCCAAAGATTGTTGGCGAAGGGCTTGTCATCGATGAATGGgtatgtc--tcttcaagtca-tgtggctctggctctttcgatgatttgttcgttttc-tcgttgctgaaaaatccttc---atgtgttaatcacag

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G06430.1 (Glycine max), 5'ss of exon 6
CCAGTTGGCTGAGGCTGAGGCTGCAGTTGAGGCTCGCAAGAAACCACCAGAAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaatcatcttgtgaatttgattatat-ttctcataaaattttgttcatat----aaatggttttcatcatatcctactctatt-ctgcttttccag
 ||| ||||||| ||||| |||||  ||||||| |||||||||||  ||||||| |||||||| |  ||||| |||||||||||||||||||| |||||||| ||    |   ||| ||  |||||| | |  || || |   ||| |||| || |    ||||| ||   ||  ||   || |||||       ||| |||
ACAGCTGGCTGATGCTGATGCTGCCCTTGAGGCACGCAAGAAACCTGCAGAAGATGCAGGTCCTAAAATTATCGGGGAAGGACTTGTCATAGACGAATGGgtcagtatgtttactt-tgcttttgatcagaagttttccttgcattatgttaattttggcaaatgcttcatatattaaa-taatctatgatcatgttttcag

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G32050.1 (Glycine max), 5'ss of exon 6
CCAGTTGGCTGAGGCTGAGGCTGCAGTTG---AGGCTCGCAAGAAACCACCAGAAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgag-----ctaatcatcttgtgaatttgattatatttctcataaaattttg---ttcatataaatggttttcatcatatcctactctattctgcttttccag----
   | ||||||||||||| ||||| ||||   |||| || |||| | | |||||||| |||||||| | |||| | || ||||| |||||||||||||||||||||||      || | || || |  ||| ||  |  |  ||  ||| || |     ||  || ||||| ||  ||     || |   |   |||| ||||        
---GCTGGCTGAGGCTGATGCTGCTGTTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGCGAAGGGCTTGTCATAGATGAATGGgtgagtaagtttacttattttttttattggaaaagttcccttgtaatatgtcactttttttacaaatgcttcacacgtcttcatctacatctctgattttgtttgcag

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G07260.1 (Glycine max), 5'ss of exon 6
CCAGTTGGCTGAGGCTGAGGCTGCAGTTGAGGCTCGCAAGAAACCACCAGAAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaatcatcttg----tgaatttgattatatttctcataaaattttgttcat----------ataaatggttttcatcatatcctac-tctattctgct-tttccag
 ||| ||| ||||||||| ||||| |||||||| || |||| | | |||||||| |||||||| | |||| | || ||||| || ||| ||||||||||||||||    |   |||     |  ||| ||  |  || ||  |||| | |  |   |          | ||||| ||  | || |   |||| ||| |  |  | |||||||
TCAGCTGGTTGAGGCTGATGCTGCTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGAGAAGGGCTCGTCGTAGATGAATGGgtgagtatgtttacttagttttttattggaaaagtttccttgtaaattgtaatatgtcacttttttgacaaatgcttcacgtcttcatctacatctctgattttgtttccag

upper sequence: Vv00s0203g00040.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G21450.2 (Arabidopsis thaliana), 5'ss of exon 5
CCAGTTGGCTGAGGCTGAGGCTGCAGTTGAGGCTCGCAAGAAACCACCAGAAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaatcatcttgtgaatttgattatatttctcataaaattttgttcatataaatggttttcatcatatcctactctattctgcttttccag
 || || || || || || || || || ||||| || |||||||| ||||| ||  ||||||||| ||| ||||| ||||| ||||| || ||||||||||| ||    |||| |  |    |  | | | | |  ||| | ||  |  | | | |  ||   ||  |  | || ||| || |  |       |||
TCAATTAGCAGAAGCGGATGCAGCGGTGGAGGCACGAAAGAAACCTCCAGAGGAAACAGGTCCAAAGATGATTGGAGAAGGGCTTGTGATCGATGAATGGgtcagtc--tcatttgcta---tccagtgtctcttccattagatgattgtgaaa-atctgacattgtttttgtcttac-ctctaataaaaacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370640|gb|EC930211.1|EC930211
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|27581899|gb|CB004594.1|CB004594
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|33403462|gb|CF209089.1|CF209089
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|32245411|gb|CD711230.1|CD711230
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|26265089|gb|CA816152.1|CA816152
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|30303167|gb|CB979961.1|CB979961
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|110694278|gb|EE071243.1|EE071243
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|32245848|gb|CD711667.1|CD711667
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|352768798|gb|FQ468010.1|FQ468010
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|27582368|gb|CB005063.1|CB005063
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|32457525|gb|CD798699.1|CD798699
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|33403546|gb|CF209173.1|CF209173
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATCCCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|110374705|gb|EC939628.1|EC939628
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|22011514|gb|BQ796548.1|BQ796548
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|352768232|gb|FQ469407.1|FQ469407
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|110360356|gb|EC923388.1|EC923388
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATCCCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|351033212|gb|FQ461984.1|FQ461984
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACGGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|30323727|gb|CD006989.1|CD006989
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|110370543|gb|EC929968.1|EC929968
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         AAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAAAGATACCTTGCTCGACAGCAGGTTGAAGGGGTTGAC
EST: gi|110383168|gb|EC947523.1|EC947523
EST:     AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGG                         GAAGAGCGAAGGGAA
genomic: AAGACGCAGGTCCAAGGATTATTGGGGAAGGACTTGTCATAGATGAATGGgtgagctaat ... gcttttccagAAAGAGCGAAGGGAA