Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGGAGgtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaagtgttctgatatatgtattttcattttgctgttag

Basic information

species Vitis vinifera
transcript Vv00s0199g00220.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G03040.1 (Glycine max), 5'ss of exon 6
GTCCAGGAAAGTGGTTCAAAATATTCATCTTTCTGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGGAGgtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatgatgccaggcatcaagtgttctgatatatgtattttcattttgctgttag
||| |||||||||||||| |||||||||||||| || |||||  |  |||||||||||||||| |||||  | ||   ||||||||| || | | || ||||| || ||| || |  | ||||||  | | |||  |   |||||   |  || ||  |  | |     |   || | ||        |||  |||| |||  |     || |   ||| | |    
GTCAAGGAAAGTGGTTCAGAATATTCATCTTTCAGGTGGAAGCCTATTAGGAGTTTCACGTGGAGGACCTGGAGTCAGTGAAATTGTGGACAATTTGAAGgtggtctattgat-gcattctattgacaaa-attcatgattttgcagaaaaaagtttatttttttattctgggtact-atatttactgtcatttgtt-tgacgtgcaagttatggattt-cag----

upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G04570.1 (Glycine max), 5'ss of exon 7
GTCCAGGAAAGTGGTTCAAAATATTCATCTTTC---TGGCGGAAGTTTGCTAGGAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGGAGgtgctcaatttattgtttcctattgttagacatttctttgtttgcttgaggaaattgctgatgtagaattacataatga-tgccaggcatcaagtgttctgatatatgtattttcattttgctgttag
    |||||||||||||| ||||||||||||||   |||  ||||  |  | |||||||||||||| |||||  | ||   ||||||||| || | | || ||||| || || |||   |||       || |  ||    | |||||  |  ||| ||  |  | |    ||  ||| ||  | | |    |   ||| | || |  | ||   |   | | | | | ||
---AAGGAAAGTGGTTCAGAATATTCATCTTTCAGGTGGAAGAAGCCTATTGGGAGTTTCACGTGGAGGACCTGGAGTCAGTGAAATTGTGGACAATTTGAAGgtggtctatatatcccttctataaaataaatgttg---tatttgc--ggagaagtttttatttt----ttttatactgggtacaatatttactgtgatttgtttgacgtgcatgt-tatggatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859409|gb|DT008464.1|DT008464
EST:     GAGTTTCACGTGGGGGACCCAGTGTTGCTCAAATTGTTGATAGTATGGAG                         AAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCT
genomic: GAGTTTCACGTGGGGGACCCAGTGTTGCTGAAATTGTTGATAGTATGGAGgtgctcaatt ... ttgctgttagAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCT