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TTTCTTCTTTGGAAGAACACCTTTGATTAAGTTATCTCCAAAAAAAACTTGGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTGgtagtctctccttttctttggtgacaatgaacacatatattgtcttgcacatttttacttctgaataatgtggggaagcattttttggctggaggaacgt...
species | Vitis vinifera |
transcript | Vv00s0187g00380.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTG CTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAGEST: gi|32271292|gb|CD720451.1|CD720451
genomic: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTGgtagtctctc ... gttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
EST: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTG CTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAGEST: gi|32249237|gb|CD715056.1|CD715056
genomic: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTGgtagtctctc ... gttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
EST: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTG CTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAGEST: gi|32271411|gb|CD720570.1|CD720570
genomic: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTGgtagtctctc ... gttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
EST: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTG CTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAGEST: gi|32249768|gb|CD715587.1|CD715587
genomic: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTGgtagtctctc ... gttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
EST: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTG CTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
genomic: GGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTGgtagtctctc ... gttcatgcagCTTGCAAATATCATGGGTCGTTTTCAGTGGCTAACATGTCCAAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTTCTTTGGAAGAACACCTTTGATTAAGTTATCTCCAAAAAAAACTTGGGAAGGTTTCATTGGGGCATCTATTGCAACTATTATCTCTGCATTTGTGgtagtctctccttttctttggtgacaatgaacacatatattgtcttgcacatttttacttctgaataatgtggggaagcattttttggctggaggaacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaggaa