Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattggtttataaactctaagatgatgctttagccaactgtgtgataactatttgatttgtctctcttttctcctccttttcaaagtactctttagactttatatgtttttttaagaaaaaaataataaaccctctttcaattcatgagaggctgatatgatgttttgatacag

Basic information

species Vitis vinifera
transcript Vv00s0187g00220.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G44410.1 (Glycine max), 5'ss of exon 7
GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattggtttataaactctaagatgatgctt-tagccaactgtgtgat--aactatttgatttgtctctcttttctcctccttttcaaagtactctttagactttatatgtttttttaagaaaaaaataataaaccctctttcaattcatgagaggctgatatgatgttttgatacag
|||||||||||| ||||| |||||||| || || |||||||||||  |||| ||||||||||||| ||  ||  ||  || ||      |  |   | ||  ||  |   ||||  | |  ||| ||   | |   ||||  |||| | |    | ||   | |    |||  || | |    | ||      || | |  |     |||     || || |    |   || |||| || |||
GTACTTCCTCAATCTGTTTGGATTAAGAGGATTCTTTAGTCTCATCTTGGGTGAAGAAAATGgttagttatgacttgaaagctggtcacttttatatgtatacatttagttgattcatcagtttcatgaatatgaatttttacctcttgtc---actatgttgtcatttttccat-tatagcaaggattgggttagttagacaatagtcaggagttgtgatgt--gtgctat-ttttaatgcag

upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 4
-GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattggtttataaactctaagatgatgctttagccaactgtgtgataactatttgattt---gtctctcttttctcctccttttcaaagtactctttagactttatatgtttttttaagaaaaaaataataaaccctctttcaattcatgagaggctgatatgatgttttgatacag
 |||||||||||| ||||| |||||||| || || |||||||||||  |||| ||||||||||||| ||  |    |  || ||      |  |  | ||   |  | ||   ||| |  |  ||||   |  | |  ||| | || |||||||   |  | |      |||  ||||    |  |        | ||     || |||   || |||                           
GGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATATTGGGTGAAGAAAATggttagttataacatgaaagct---gatttcttttatatgtatatttgaattaattcatcaatttcatgaatatgatttttactacttttcattatgttgtc--atttttccatgtaagctggaatttgttgtgatgtgtgctgttt---tttatgca-------------------------

upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 5'ss of exon 6
GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattggtttataaactctaagatgatgctttagccaactgtgtgataactatttgatttgtctctcttttctcctccttttcaaagtactctttagactttatatgtttttttaagaaaaaaataataaaccctctttcaattcatgagaggctgatatgatgttttgatacag
||||||| | ||| |||| |||||||| || || || ||||||||||| ||||| |||||||||| |   |    ||  || |        || | | |   ||||      |    ||   || |   | |  |||  | || | | ||                                                                                           
GTACTTCTTGAACTTGTTTGGATTAAGAGGCTTGTTCAGTCTCATTCTCGGAGATGAAAATGgttagctgtcacatacgaatttgctccacattcctcaaa-aactaaactgtggtcat--aatct---tttacttttgcttcgtatgcag------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77588076|gb|DV223250.1|DV223250
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|51051352|gb|CO819013.1|CO819013
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|46910396|gb|CN545771.1|CN545771
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|34321024|gb|CF373778.1|CF373778
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|28961834|gb|CB340921.1|CB340921
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110726655|gb|EE102627.1|EE102627
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|32460380|gb|CD801554.1|CD801554
EST:     AGTCTCATTCTGGGAGAAGAAAATATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGAT
genomic: AGTCTCATTCTGGGAGAAG-AAA-ATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGAT
EST: gi|46909662|gb|CN545207.1|CN545207
EST:     GATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: GATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110685864|gb|EE062959.1|EE062959
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|29783362|gb|CB349482.2|CB349482
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATGCCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|77577964|gb|DV217740.1|DV217740
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|27583872|gb|CB006567.1|CB006567
EST:     TTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: TTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110701548|gb|EE079248.1|EE079248
EST:     CCTGTTCGGATTAAAGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110367435|gb|EC931368.1|EC931368
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110388011|gb|EC952723.1|EC952723
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|26262869|gb|CA813932.1|CA813932
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|26257347|gb|CA808410.1|CA808410
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110383463|gb|EC947838.1|EC947838
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|34542613|gb|CF510845.1|CF510845
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110396217|gb|EC961898.1|EC961898
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|46909636|gb|CN545181.1|CN545181
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|28970526|gb|CB349559.1|CB349559
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATGCCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71873805|gb|DT022860.1|DT022860
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGGTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110371370|gb|EC935343.1|EC935343
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|34549179|gb|CF517411.1|CF517411
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAACG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71875866|gb|DT024921.1|DT024921
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCA
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCA
EST: gi|110701549|gb|EE079249.1|EE079249
EST:     CCTGTTCGGATTAAAGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|27585127|gb|CB007822.1|CB007822
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAA
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAA
EST: gi|352790841|gb|FQ475478.1|FQ475478
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|32457130|gb|CD798304.1|CD798304
EST:     TGTTCGCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: TGTT--CGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|294964063|gb|GW837866.1|GW837866
EST:     CCTGTTCGGATTTAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACC-AGCGTATGATGCAAATGAGTGGGTTCGGC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGC
EST: gi|34232018|gb|CF369054.1|CF369054
EST:     CCTGTTCGGATTAAGGGGTTCATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|77577299|gb|DV217363.1|DV217363
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|22009765|gb|BQ794799.1|BQ794799
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|352794704|gb|FQ475202.1|FQ475202
EST:     CCTGTTCGGATTAAGGGGTCTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71873978|gb|DT023033.1|DT023033
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71872223|gb|DT021278.1|DT021278
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71874611|gb|DT023666.1|DT023666
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71875857|gb|DT024912.1|DT024912
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110712770|gb|EE088107.1|EE088107
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAA-TG                         CCACAGATGATACCCAGCGTATGATGCNAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71868316|gb|DT017371.1|DT017371
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|34542700|gb|CF510932.1|CF510932
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|33406423|gb|CF212050.1|CF212050
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCTCAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|26258038|gb|CA809101.1|CA809101
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110729230|gb|EE105337.1|EE105337
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|77584920|gb|DV221543.1|DV221543
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|352781978|gb|FQ469276.1|FQ469276
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|26258231|gb|CA809294.1|CA809294
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|30131965|gb|CB917304.1|CB917304
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|28961974|gb|CB341013.1|CB341013
EST:     CCTNNTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110717983|gb|EE094317.1|EE094317
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110702874|gb|EE079227.1|EE079227
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAA-TG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|77582909|gb|DV220445.1|DV220445
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|32245682|gb|CD711501.1|CD711501
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|33405791|gb|CF211418.1|CF211418
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71869568|gb|DT018623.1|DT018623
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110363258|gb|EC926834.1|EC926834
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|46910506|gb|CN545881.1|CN545881
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71856647|gb|DT005702.1|DT005702
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAA-TG                         CCACAGATGATACC-AGCGTATGATGCAAATGAGTGG
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGG
EST: gi|349830208|gb|FQ420468.1|FQ420468
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCANATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|71875634|gb|DT024689.1|DT024689
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|26257452|gb|CA808515.1|CA808515
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110381363|gb|EC946692.1|EC946692
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|26257101|gb|CA808164.1|CA808164
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110388030|gb|EC952744.1|EC952744
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110687779|gb|EE065579.1|EE065579
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|26261832|gb|CA812895.1|CA812895
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|351013193|gb|FQ424898.1|FQ424898
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|110715351|gb|EE093304.1|EE093304
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
EST: gi|351016605|gb|FQ424032.1|FQ424032
EST:     CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATG                         CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC
genomic: CCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattg ... tttgatacagCCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACTTCCTCAACCTGTTCGGATTAAGGGGTTTATTTAGTCTCATTCTGGGAGAAGAAAATGgtttgtattggtttataaactctaagatgatgctttagccaactgtgtgataactatttgatttgtctctcttttctcctccttttcaaagtactctttagactttatatgtttttttaagaaaaaaataataaaccctctttcaattcatgagaggctgatatgatgttttgatacag

- - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA