Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCATGGCATCTCTTTCTGCAATGGTCCAACTCGAATTGCCTCATGTTAATATTCTCTCCAAAATGGACCTTGTAACGAACAAAAGGGATATTGAAGAgtgggcctcttatgcacttcactatatcctacttcttgatgttgttctattttattttctttttctgatattcatgtcatttttatatttttgctctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0174g00200.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G39880.1 (Glycine max), 5'ss of exon 7
GTTGCATGGCATCTCTTTCTGCAATGGTCCAACTCGAATTGCCTCATGTTAATATTCTCTCCAAAATGGACCTTGTAACGAACAAAAGGGATATTGAAGAgtgggcctcttatgcacttcactatatcctacttcttgatgttgttctattttattttctttttctgatattcatgtcatttttatatttttgctctcag
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GATGCATGGCATGTCTTTCTGCGATGGTTCAACTTGAACTACCTCATGTTAATATCCTCTCAAAGATGGACCTTGTGACTAAAAAGAAGGATCTTGAAGAgta--tttactat------tactaaaacttctttcccaaatttgtctt-ctccatttcattcatttaatttctaa--------tatacttttgctcttag
upper sequence: Vv00s0174g00200.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G12790.4 (Arabidopsis thaliana), 5'ss of exon 7
GTTGCATGGCATCTCTTTCTGCAATGGTCCAACTCGAATTGCCTCATGTTAATATTCTCTCCAAAATGGACCTTGTAACGAACAAAAGGGATATTGAAGAgtg-ggcctcttatgcacttcactatatcctacttcttgatgttgttctattttattttctttttctgatattcatgtcatttttatatttttgctctcag
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GTTGCATGTCATCTCTCGCTGCAATGATCCAGCTTGAATTACCACATGTCAACATCCTCTCAAAAATGGACCTCTTGCAGGACAAAAGCAACATTGATGAgtatggattcctattt--ttccctttgtttttctccgttgcagtttcggtatttattaaattgctttgtgtttgacgtggctttag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71886574|gb|DT035629.1|DT035629EST: AATATTCTCTCCAAAATGGACCTTGTAACGAACAAAAGGGATATTGAAGA CTACTTGAATCCGGAGCCTCGGTTTTTACTGTCAGAGCTGAATCAACTCAT
genomic: AATATTCTCTCCAAAATGGACCTTGTAACGAACAAAAGGGATATTGAAGAgtgggcctct ... ttgctctcagCTACTTGAATCCGGAGCCTCGGTTTTTACTGTCAGAGCTGAATCAACGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCATGGCATCTCTTTCTGCAATGGTCCAACTCGAATTGCCTCATGTTAATATTCTCTCCAAAATGGACCTTGTAACGAACAAAAGGGATATTGAAGAgtgggcctcttatgcacttcactatatcctacttcttgatgttgttctattttattttctttttctgatattcatgtcatttttatatttttgctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA