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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACTGCCAGCAGCAGCCTGAAAAATCAGTATGTATTGTTTGTCAAACTTCTGAGAATCTCTGGATTTGTGTTCTTTGCGGTTTTGTTGGTTGTGGGAGgtaataaatcaattttctcctatgagttaacttctttctagggatttccccccaccttcccaccacaagtacagatattttttatatgcatttgcttattaagaaaattttgatgcag

Basic information

species Vitis vinifera
transcript Vv00s0125g00250.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G00770.1 (Glycine max), 5'ss of exon 8
GATACTGCCAGCAGCAGCCTGAAAAATCAGTATGTATTGTTTGTCAAACTTCTGAGAATCTCTGGATTTGTGTTCTTTGCGGTTTTGTTGGTTGTGGGAGgtaataaatcaattttctcctatgagttaacttctttctagggatttccccccaccttcccaccacaagtacagatattttttatatgcatttgcttattaagaaaattttgatgcag
| || |||||||||||  ||||||||||  ||||| |||||||||||||  ||||||| || ||||| |||||| | || || | |||||| ||||| |||| | |    |   || |  | | |  |   ||  ||||     ||| |   |   |                 || | ||| || ||  |      ||   |||||| ||||| |||
GCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTATGGATATGTGTTATATGTGGGTATGTTGGCTGTGGAAGgtgagactgaacccttgttttgtcatgt---tttattct-----ttttctttctttt-----------------atgtatttgatttgattacaaccatatggaaaatcttgattcag

upper sequence: Vv00s0125g00250.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G26000.1 (Arabidopsis thaliana), 5'ss of exon 7
GATACTGCCAGCAGCAGCCTGAAAAATCAGTATGTATTGTTTGTCAAACTTCTGAGAATCTCTGGATTTGTGTTCTTTGCGGTTTTGTTGGTTGTGGGAGgtaataaatcaattttctcctatgagttaacttctttctagggatttccccccaccttcccaccacaagtacagatattttttatatgcatttgcttattaagaaaattttgatgcag
|||| ||||| ||||| |||||||| |||||||||  |||||| |||||  | |||||||||||||| |||||| | || ||  ||||||| || || |||||   | |  |||| || |    | ||| | |     ||| ||  |  | ||  ||   |    | ||   |   |||| |  |    |  | |||||                   
GATATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAACAACGGAGAATCTCTGGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGgtatgtactgcatttcctgc----aattagcat-----tagagacatgtctccttctcatctgtcccaggttaaccatttctctttgttaaatacttatggtag--------------