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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCACATCCCGAGTATAACCTTTTTGCTACTATTGTGCATTCAGGCTACTCACCTGAGTCAGGACACTATTATGCATATATCAAGgtatctcttcacctgtcctgttctattctctactcttgcttttggtactcaggtttgacaaagcagctttgtccttttttttttccctgatttttggttgcacttatgtgtgtatag

Basic information

species Vitis vinifera
transcript Vv19s0093g00560.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0093g00560.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G18720.1 (Glycine max), 5'ss of exon 5
GATTCACATCCCGAGTATAACCTTTTTGCTACTATTGTGCATTCAGGCTACTCACCTGAGTCAGGACACTATTATGCATATATCAAGgtatctcttcacctgtc-ctgttctattctctactcttgcttttggtactcaggtttgacaaagcagctttgtccttttttttttccctgatttttggttgcacttatgtgtgtatag
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GATCCCCAACCGGAATATAAGCTCTTTGGCACTATTGTGCATTCAGGCTACTCCCCCGAATCTGGTCACTACTATGCTTATATAAAGgt--ttgttaatttatagttcatatgtacccaaattatgtagctgatacattgattc--ctaaataacttctaattgtgcccagaatctaatttcctattctgttcacag--------