Sequence
atgc intronic sequence ATGC exonic sequenceTCCTCTAATTGGATCCTCTATCCAATCTGCTACAGGTGTTGTCTACAATATTACTGGGGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAGgtagtttgaatatcatggaatttttgtttcagttcccttccctcttaaatttgctggtagaacaagttatggaacaagtacattttgcataaaaccagac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g56970.1 (Oryza sativa), 5'ss of exon 5
TCCTCTAATTGGATCCTCTATCCAATCTGCTACAGGTGTTGTCTACAATATTACTGGGGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAGgtagtttgaatatcatggaatttttgtttcagttcccttccct---cttaaatttgctggtagaacaagttatg--gaacaagt----acattttgcataaaaccagac-----------------------------------------------------------------------------------
|||| |||| || || ||||| | | ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| || | ||| |||||||| | ||||| || || | | ||| | || | | || | |||| | ||| || | | | | | | || ||
TCCTTTAATCGGGTCGTCTATTGAGGCGGCTACTGGTGTTGTGTACAATATCACTGGTGGAAAGGACATAACCTTGCAAGAAGTAAACAAAGTCTCTCAGgtgcgtgtaatatttcttgccattgtcttgaactgtctttgaagaagtatgatatagcactgtaatatgttaagtcgaaaaacttaagatgctattatcacgatcatactccacaatttagggctactggaattatgtggcctaggtgattgaagtgctttgttttgaccaatgcttatgcacgttttgcag
upper sequence: Vv19s0090g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G46530.1 (Glycine max), 5'ss of exon 5
TCCTCTAATTGGATCCTCTATCCAATCTGCTACAGGTGTTGTCTACAATATTACTGGGGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAGgtagtttgaatatcatggaatttttgtttcagttcccttccctcttaaatttgctggta-gaacaagttatggaacaa--gtacattttgcataaaaccagac
|||| |||||||||||||||| || || ||||| || || || || ||||||||||| ||||||||||||||| |||| ||||| || || || ||||||||| ||| || || | | ||| || || | || | | |||| | | ||| ||| | || ||| | | | | | |
TCCTTTAATTGGATCCTCTATTCAGTCAGCTACTGGGGTAGTGTATAATATTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAGgta-tttaaagattgtc-accacttgcttaagaaacattttgttattcctttgatcttgtgaatttgttgcaaactaaccgtataatgtttcttgattttta-
upper sequence: Vv19s0090g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G02110.1 (Glycine max), 5'ss of exon 5
TCCTCTAATTGGATCCTCTATCCAATCTGCTACAGGTGTTGTCTACAATATTACTGGGGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAGgtagtttgaatatcatggaatttttgtttcagttcccttccctcttaaatttgctggta-gaacaagttatggaacaagtacattttgcataa-aaccagac
|||| |||||||||| ||||| || || ||||| || || || || ||||||||||| ||||||||||||||| |||| ||||| || || || ||||||||| ||| || || | ||| || || | || | || |||| | | || ||| | || | || || | |
TCCTTTAATTGGATCATCTATTCAGTCAGCTACTGGGGTAGTGTATAATATTACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGGGTTTCTCAGgta-tttaaagattgtcaccacttt-cttaagaaacattttgtttttcctttgatcttgtaaatttgttgcaaactaaccatataatgtttcttgattttgt
upper sequence: Vv19s0090g01320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G10030.1 (Glycine max), 5'ss of exon 6
TCCTCTAATTGGATCCTCTATCCAATCTGCTACAGGTGTTGTCTACAATATTACTGGGGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAGgtagttt-gaatatcat----ggaatttttgtttcagttcccttcc---ctcttaaatttgctggtagaacaagt--tatggaacaagtacattttgcataaaaccagac
||| ||||||| || ||||| || || ||||| || || || || || ||||||||||| | |||||||| |||||||||| || ||||||||||||||| || |||| | || ||| |||||| ||| || | |||||| || | | || || | || | | | |
-CCTTTAATTGGCTCTTCTATTCAGTCAGCTACTGGAGTAGTGTATAACATTACTGGGGGGAGAGACATAACTCTGCAAGAAGTGAACAGAGTGTCTCAGGtacttaagaattttattgtcagaaggaacatttcagcattcttttgatcttatgaatttgttgtgaacatttgtatcctgttttcaaaacttcataactgctgtagg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871223|gb|DT020278.1|DT020278EST: TTACTGGCGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAG GTTGTTACAAGTCTGGCCGATCCTTCAGCTAACATAATATTTGGAGCTGTT
genomic: TTACTGGGGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAGgtagtttgaa ... catgattcagGTTGTTACAAGTCTGGCCGATCCTTCAGCTAACATAATATTTGGAGCTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTCTAATTGGATCCTCTATCCAATCTGCTACAGGTGTTGTCTACAATATTACTGGGGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAGgtagtttgaatatcatggaatttttgtttcagttcccttccctcttaaatttgctggtagaacaagttatggaacaagtacattttgcataaaaccagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cataaaa