Sequence
atgc intronic sequence ATGC exonic sequenceGGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggcttcagaacagtaatgcttaattttggcttcagaatagtaatgtttaatggataatgctggcagtttattcattttactttgttttccttttgttgctaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G02180.4 (Glycine max), 5'ss of exon 6
GGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggcttcagaacagtaatgcttaattttggcttcagaatagtaatgtttaatggataatgctggcagtttattcattttactttgttttccttttgttgctaag
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CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtact----------aaagaacttctgaaattta----cagattcga---gctccaagtatgatattaacttctttttctttttatttgataataaag-----------
upper sequence: Vv19s0090g01230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G46450.3 (Glycine max), 5'ss of exon 6
GGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggcttcagaacagtaatgcttaattttggcttcagaatagtaatgtttaatggataatgctggcagtttattcattttactttgttttccttttgttgctaag
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CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgta---ggtactaaagaacttatg---aagttta----cagattcga---gttccaagtatgatattaactgtttttttcctttaataataaag---------------
upper sequence: Vv19s0090g01230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G02200.1 (Glycine max), 5'ss of exon 9
GGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggcttcagaacagtaatgcttaattttggcttcagaatagtaatgtttaatggataatgctggcagtttattcattttactttgttttccttttgttgctaag
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CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtact----------aaagaacttctgaaattta----cggattcga---gctccaagtatgatattaacttctttttctttttatttgataataaag-----------
upper sequence: Vv19s0090g01230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G10090.1 (Glycine max), 5'ss of exon 6
-----------------------------GGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggcttcagaacagtaatgcttaattttggcttcagaatagtaatgtttaatggataatgctggcagtttattcattttactttgttttccttttgttgctaag
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GATATGTGGAATCTAATGGATACCCCTATAGAGGAAAGGAGACTATTTGATCATGTTACCTGTAATATCTCAGCTTCAGTTGATGAAGTCACTGTTCCCGgtgcccttgctctggatctgatttagcag-------------------------------------------------------------------------------------------------------------
upper sequence: Vv19s0090g01230.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G55230.1 (Arabidopsis thaliana), 5'ss of exon 6
GGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggcttcagaacagtaatgctta--attttggcttcagaatagtaatgtttaatggataatgctggcagtttattcattttactttgttttccttttgttgctaag
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TGAGGAAAGAGAGCTTTTTGATCATGTTACCTGTAACATTTCATCTTCAGTCGATGAGGTCACTGTGCCAGGTGCTCTTGCACGTGATTTGATTGAGCAGgtaatttatattgcattgatcaatcttcctatgtcctctcttagaaaccagttactgcttgctaatattcatgtaaaatttgtgaag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110382679|gb|EC946996.1|EC946996EST: TTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAG GCTGAGGTGGAAGTTGAAAGGCTTGATCAACTGAAAGCCAGCAGGATGAAG
genomic: TTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggct ... tgttgctaagGCTGAGGTGGAAGTTGAAAGGCTTGATCAACTGAAAGCCAGCAGGATGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtatttggcttcagaacagtaatgcttaattttggcttcagaatagtaatgtttaatggataatgctggcagtttattcattttactttgttttccttttgttgctaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG