Sequence
atgc intronic sequence ATGC exonic sequenceTTTCTTCTTTGGAAAAACGCCTTTGATCAAACTCTCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgagtattgttcactgactcctttgaagtcgatatttgagcttctccttctgctcctccttccaggcccccgcttccttttatttatttatttaattat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g55360.4 (Oryza sativa), 5'ss of exon 6
TTTCTTCTTTGGAAAAACGCCTTTGATCAAACTCTCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgagt----attgttcactgactcctttgaagtcgatatttgagcttctccttctgctcctccttccaggcccccgcttccttttatttatttatttaattat
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GTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCTGTGACAACTATCATATCTGCTTTTGTGgtgagatgaaagcttctgttaattgttttt--gtagttctctaactatgctagtctatgtcagttagcatggtttattttcacgcaagactactatgccact--
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G062416_T02 (Zea mays), 5'ss of exon 1
TTTCTTCTTTGGAAAAACGCCTTTGATCAAACTCTCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgagtat-tgttcactgactcctttgaagtcgatatttgagcttctccttctgctcctccttccaggcccccgcttccttttatttatttatttaattat---
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GTTCTTCTTTGGGAAAACACCACTGATCAAGCTCTCTCCAAAGAAAACATGGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTGgtcagtaaatacgtact-attcttctaaaat---tatctctgtttactattgctaaccaatgaccatataaccaatatgtggtgcataatatttttgttcgatg
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G825110_T01 (Zea mays), 5'ss of exon 6
TTTCTTCTTTGGAAAAACGCCTTTGATCAAACTCTCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgagtattgttcactgactcctttgaagtcgatatttgagcttctccttctgctcctccttccaggcccccgcttccttttatttatttatttaattat---
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GTTCTTTCTTGGGAGAACACCATTAATCAAGTTGTCCCCAAAGAAAACATGGGAAGGTTTTATTGGTGCATCCGTGACAACTATCATCTCTGCATTTCTGgtgagactt---tgttaaattctcggtttctcattaggataattttatagcaatgttttttttgaaattatgagatctgtttatagccttatctctttggctc
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 6
TTTCTTCTTTGGAAAAACGCCTTTGATCAAACTCTCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgag-tattgttcactgactcctttgaagtcgatatttgagcttctccttctgctcctccttccaggcccccgcttccttttat----ttatttatttaattat
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GTTCTTTCTTGGGAGAACACCATTAATCAAGTTGTCTCCAAAGAAAACTTGGGAAGGTTTTATTGGTGCATCAGTGACAACTATCATCTCTGCGTTTCTGgtgagactttgttaaattcctgattcctcatcaggat---agtttatag--cgacttttttttggaaatgacgacatttgtctatagtgttacccctttgttttt
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G02210.1 (Glycine max), 5'ss of exon 4
TTTCTTCTTTGGAAAAACGCCTTTGATCAAACTCTCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgagtattgttcactgac-----------tcctttgaag---tcgatatttgagcttctcct-----tctgctcctccttccaggcc---cccgcttccttttattta--tttatttaattat--------------------------------------------------
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TTTCTATTTTGGGAGAACACCTCTGATCAAGCTTTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCGTCTGTTGCCACTATGATTGCTGCATTTACGgtaagcatcagtcagtgacatcaactaccatcccaaaaagctttcaaaattcacaccttgtttatagctctactagatcttttgtgtttaactcacaacctccactttaagttgatttaatgatatttttcagtatttttgctttgcatgatgatgtcacttatgtttgtgcag
upper sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G46440.1 (Glycine max), 5'ss of exon 6
TTTCTTCTTTGGAAAAACGCCTTTGATCAAACTCTCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgagtattgttcactgactcctttgaagtcgatatttgagcttctccttctgctcctccttccaggcccccgcttccttttatttatttatttaattat--
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TTTCTATTTTGGGAGAACACCTCTGATAAAGCTTTCTCCAAAGAAAACCTGGGAAGGTTTCATTGGAGCGTCTGTTGCCACTATGATTGCTGCATTCACGgtaagcattctgcttttgtttagtcacttcttatgtcaggaaaatgctaagcaactaccatcccaaaaaactttcaaactttac--accttctttattgctcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110424073|gb|EC990426.1|EC990426EST: GGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTG CTCGCAAACATTCTGGGCCATTTCCCGTGGCTGACATGTCCGAGGAAG
genomic: GGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgagtattg ... ttgtatgcagCTCGCAAACATTCTGGGCCATTTCCCGTGGCTGACATGTCCGAGGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCTTCTTTGGAAAAACGCCTTTGATCAAACTCTCTCCAAAGAAAACATGGGAAGGTTTTATTGGAGGATCAGTTGCAACTGTGATCTCAGCATTTGTGgtgagtattgttcactgactcctttgaagtcgatatttgagcttctccttctgctcctccttccaggcccccgcttccttttatttatttatttaattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccgc