1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATTAACTCCACAATTCAGATTGTGGAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatcctttataaaacaaatttcaaagatcattaaatttgtctttttgctttccttttcttttttctttatttaatcctttctgtgaatactgatgaaatattttgatttccctgactactgacatttcttag
species | Vitis vinifera |
transcript | Vv19s0090g01020.t01 |
intron # | 5 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GAACACAAAGAAGCTTTACGCGCATCCAACGCTTTGGAGATTTTGAGCAA ATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGATEST: gi|351044077|gb|FQ452750.1|FQ452750
genomic: GAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatccttta ... catttcttagATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGAT
EST: GAACACAAAGAAGCTTTACGCACATCCAACGCTTTGGAGATTTTGAGCAA ATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGATEST: gi|349815971|gb|FQ403612.1|FQ403612
genomic: GAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatccttta ... catttcttagATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGAT
EST: GAACACAAAGAAGCTTTACGCACATCCAACGCTTTGGAGATTTTGAGCAA ATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGATEST: gi|161721075|gb|FC070004.1|FC070004
genomic: GAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatccttta ... catttcttagATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGAT
EST: GAACACAAAGAAGCTTTACGCGCATCCAACGCTTTGGAGATTTTGAGCAA ATATGATCTAGTTAATCGATGCAACAGATAATGTCCCTAGCCGGTACATGAEST: gi|349813558|gb|FQ413792.1|FQ413792
genomic: GAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatccttta ... catttcttagATATGATCTAGTTA-TCGATGCAACAGATAATGTCCCTAGCCGGTACATGA
EST: GAACACAAAGAAGCTTTACGCACATCCAACGCTTTGGAGATTTTGAGCAA ATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGATEST: gi|351013602|gb|FQ429743.1|FQ429743
genomic: GAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatccttta ... catttcttagATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGAT
EST: GAACACAAAGAAGCTTTACGCACATCCAACGCTTTGGAGATTTTGAGCAA ATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGATEST: gi|351020215|gb|FQ445822.1|FQ445822
genomic: GAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatccttta ... catttcttagATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGAT
EST: GAACACAAAGAAGCTTTACGCACATCCAACGCTTTGGAGATTTTGAGCAA ATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGAT
genomic: GAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatccttta ... catttcttagATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTAACTCCACAATTCAGATTGTGGAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAgtatcctttataaaacaaatttcaaagatcattaaatttgtctttttgctttccttttcttttttctttatttaatcctttctgtgaatactgatgaaatattttgatttccctgactactgacatttcttag
- - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT