1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagttaatttgaataaaatattctccctttttgtcattttgtaggatagttaatttgaattcaaatattttctctttttgtcattttatatttgt...
species | Vitis vinifera |
transcript | Vv19s0090g00560.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAACCATTGAAGCAAAGGACAAAAGEST: gi|110688432|gb|EE066976.1|EE066976
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
EST: AAGCTTGANGAAGAGAAAGGCATCATAGTTCGCTTTGTAATANGTCACAG TGCTACATCAGGGGGCATEST: gi|71875910|gb|DT024965.1|DT024965
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCAT
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGEST: gi|77583730|gb|DV220900.1|DV220900
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGEST: gi|71875911|gb|DT024966.1|DT024966
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAGEST: gi|110712361|gb|EE089898.1|EE089898
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
EST: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAG TGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
genomic: AAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagtt ... ctgtataaagTGCTACATCAGGGGGCATTCTTGATAGAGCTATTGAAGCAGAGGACAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATAAAAGAAAGAAGCTTGAGGAAGAGAAGGGCATCATAGTTCGCTTTGTAATAGGTCACAGgtgggtagttaatttgaataaaatattctccctttttgtcattttgtaggatagttaatttgaattcaaatattttctctttttgtcattttatatttgt
- - - - - - - - - - - GGAAGA
- - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattcaaa