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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccattctcaactttgctttaagaaacttaaggagtagtaattgtatcacaaatttttcttcactatttgtcattaattctctgcaacatgtgacactggaaagtcaatttgcag

Basic information

species Vitis vinifera
transcript Vv19s0085g00880.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825250|gb|FQ417971.1|FQ417971
EST:     ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349827094|gb|FQ421367.1|FQ421367
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351031176|gb|FQ445003.1|FQ445003
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351022976|gb|FQ428885.1|FQ428885
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110720877|gb|EE097183.1|EE097183
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351042224|gb|FQ442691.1|FQ442691
EST:     ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351028680|gb|FQ446353.1|FQ446353
EST:     ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351026695|gb|FQ436348.1|FQ436348
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|71860234|gb|DT009289.1|DT009289
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAA                         GTTAACTATGGGGCTGCCTTTATT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATT
EST: gi|351012435|gb|FQ427036.1|FQ427036
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351023404|gb|FQ432787.1|FQ432787
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351022813|gb|FQ428722.1|FQ428722
EST:     ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349827719|gb|FQ422587.1|FQ422587
EST:     ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351012851|gb|FQ430414.1|FQ430414
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351024564|gb|FQ426373.1|FQ426373
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|77587321|gb|DV222801.1|DV222801
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349823645|gb|FQ415055.1|FQ415055
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351014822|gb|FQ438022.1|FQ438022
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349829516|gb|FQ420048.1|FQ420048
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351019842|gb|FQ439659.1|FQ439659
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAAAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|30300500|gb|CB977294.1|CB977294
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351014217|gb|FQ434806.1|FQ434806
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|33405914|gb|CF211541.1|CF211541
EST:     AAATCATAACACTAGAGTAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351021635|gb|FQ430522.1|FQ430522
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|33407740|gb|CF213367.1|CF213367
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|71864068|gb|DT013123.1|DT013123
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110711777|gb|EE088642.1|EE088642
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110711744|gb|EE088569.1|EE088569
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|161718701|gb|FC066339.1|FC066339
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349832930|gb|FQ423052.1|FQ423052
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|71861762|gb|DT010817.1|DT010817
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|294966112|gb|GW837479.1|GW837479
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110717484|gb|EE093391.1|EE093391
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351033615|gb|FQ447774.1|FQ447774
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|71856998|gb|DT006053.1|DT006053
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110377270|gb|EC942333.1|EC942333
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110685428|gb|EE062138.1|EE062138
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351027861|gb|FQ448431.1|FQ448431
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351014497|gb|FQ437499.1|FQ437499
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349824141|gb|FQ417528.1|FQ417528
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351022046|gb|FQ437833.1|FQ437833
EST:     AAATCATAACACTATAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|71860225|gb|DT009280.1|DT009280
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAAC
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAAC
EST: gi|110703160|gb|EE079765.1|EE079765
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110711357|gb|EE087747.1|EE087747
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110711773|gb|EE088638.1|EE088638
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349832839|gb|FQ422961.1|FQ422961
EST:     AAATCATAACACTAGAGCATGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTCGAGTTCTCTGCATAGGAGGCAAAACG
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATT-GAGTTCTCTGCAGAGGAGGCAAAACG
EST: gi|351015664|gb|FQ427149.1|FQ427149
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349827446|gb|FQ422314.1|FQ422314
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110700048|gb|EE077644.1|EE077644
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|161710254|gb|FC060645.1|FC060645
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110713914|gb|EE090252.1|EE090252
EST:     AAACCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351012714|gb|FQ430277.1|FQ430277
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349828464|gb|FQ417206.1|FQ417206
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGACTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110719472|gb|EE094631.1|EE094631
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351024107|gb|FQ423530.1|FQ423530
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351021887|gb|FQ437674.1|FQ437674
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACCG
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAAC-G
EST: gi|351028364|gb|FQ427260.1|FQ427260
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351016508|gb|FQ423935.1|FQ423935
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110712898|gb|EE088347.1|EE088347
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349832403|gb|FQ420964.1|FQ420964
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|349831123|gb|FQ420793.1|FQ420793
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|110719810|gb|EE095263.1|EE095263
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|161712950|gb|FC062076.1|FC062076
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|351033667|gb|FQ462197.1|FQ462197
EST:     ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: ATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
EST: gi|352763959|gb|FQ465409.1|FQ465409
EST:     AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAG                         GTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT
genomic: AAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccatt ... caatttgcagGTTAACTATGGGGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGATTTACTAATTGCCAATAAAGAAGAGCTTGGTCAAATCATAACACTAGAGCAAGGAAAACCCCTAAAAGAAGCCATTGGTGAGgtatgccattctcaactttgctttaagaaacttaaggagtagtaattgtatcacaaatttttcttcactatttgtcattaattctctgcaacatgtgacactggaaagtcaatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC