1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGGACAAAATCTTGGCAATTTTGAGGGAGTGGTTGCATCAGACAAAAATATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTGgtaagtgctttccttctttattttggtcgattaatatatacatatgtgtgtcttcacatgcacatgtatataatgatccattttctttcttttattttct...
species | Vitis vinifera |
transcript | Vv19s0027g00380.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TATATTTTCTAGAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTG ATTTGAATTTGATTCCAGAGTTGGCAGCAAAATTGCAAGAAGTTCCTGTTTEST: gi|110732599|gb|EE108027.1|EE108027
genomic: TATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTGgtaagtgctt ... atccatacagATTTGAATTTGATTCCAGAGTTGGCAGCAAAATTGCAAGAAGTTCCTGTTT
EST: TATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTG ATTTGAATTTGATTCCAGAGTTGGCAGCAAAATTGCAAGAAGTTCCTGTTTEST: gi|30323287|gb|CD006549.1|CD006549
genomic: TATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTGgtaagtgctt ... atccatacagATTTGAATTTGATTCCAGAGTTGGCAGCAAAATTGCAAGAAGTTCCTGTTT
EST: TATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTG ATTTGAATTTGATTCCAGAGTTGGCAGCAAAATTGCAAGAAGTTCCTGTTTEST: gi|27579341|gb|CB002036.1|CB002036
genomic: TATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTGgtaagtgctt ... atccatacagATTTGAATTTGATTCCAGAGTTGGCAGCAAAATTGCAAGAAGTTCCTGTTT
EST: TATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTG ATTTGAATTTGATTCCAGAGTTGGCAGCAAAATTGCAAGAAGTTCCTGTTTEST: gi|26257237|gb|CA808300.1|CA808300
genomic: TATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTGgtaagtgctt ... atccatacagATTTGAATTTGATTCCAGAGTTGGCAGCAAAATTGCAAGAAGTTCCTGTTT
EST: ATATTTTCTAAAAGGTTTACCAGATGTAACAGGACGACCACCGCCTCTTG ATTTTGAAATTTGGATTCCAGAGTTGGCAGCAAAATTTGCAAGAAAGTTCT
genomic: ATATTTTCTAAAAGGTTTAC-AGATGTAACAGGACGACCACCGCCTCTTGgtaagtgctt ... atccatacagATTT-GAA-TTTG-ATTCCAGAGTTGGCAGCAAAATT-GCAAGAA-GTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGACAAAATCTTGGCAATTTTGAGGGAGTGGTTGCATCAGACAAAAATATATTTTCTAAAAGGTTTACAGATGTAACAGGACGACCACCGCCTCTTGgtaagtgctttccttctttattttggtcgattaatatatacatatgtgtgtcttcacatgcacatgtatataatgatccattttctttcttttattttct
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