Sequence
atgc intronic sequence ATGC exonic sequenceAGAGTTTGAAAAGGCTCTACTTGAGAAATTCCCTGCTTGTTCAATTGCAGCAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGgtatgtcaatctcttgcaaacagtctttacccaaagtgaatttggttctctatcttaattttgtgccttttaaaaagtttctccttctcgaatgctttta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G48060.2 (Glycine max), 5'ss of exon 1
AGAGTTTGAAAAGGCTCTACTTGAGAAATTCCCTGCTTGTTCAATTGCAGCAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGgtatgtca-atctcttgcaaacagtc-tttacccaa--agtgaatttggttctctatcttaattttgtgccttttaaaaagtttctccttctcgaatgctttta
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GGAGTTCGAGAGGACCCTGCAGGAGAAATTTCCAGCATGCTCCATAGCAGCAAAGAGACGGATTTCTTCAACAACAACAATATTGGATGTACAGGGCTTGgtatgttgcattacacaaaattatttgtgtaccttatcactaatatcaggtgtatttct-gttgttgtttctctttgtatgcatgatagttggtgctgctt---
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G12450.1 (Glycine max), 5'ss of exon 5
AGAGTTTGAAAAGGCTCTACTTGAGAAATTCCCTGCTTGTTCAATTGCAGCAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGgtatgtca-atctcttgcaaacagtc-tttacccaa--agtgaatttggttctctatcttaattttgtgccttttaaaaagtttctccttctcgaatgctttta
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GGAGTTTGAGAGGACCCTGCAGGAGAAATTTCCAGCATGCTCCATTGCGGCAAAGAGACAGATTTCTTCAACAACAACAATATTGGATGTACAGGGCTTGgtatgttgtattacacaaaattatttgtgtaccttactaataatataaggtgtatttct-gttgctgtttctctttgtatgcgtgatagtttgtgctgctt---
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G17830.1 (Glycine max), 5'ss of exon 4
AGAGTTTGAAAAGGCTCTACTTGAGAAATTCCCTGCTTGTTCAATTGCAGCAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGgtatgtcaatctcttgcaaacagtctttacccaaagtgaatttggttctct--atcttaattttgtgcct-tttaaaaagtttctccttctcgaatgctttta
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AGAGTTCGAGAGGGCTCTGCAGGAGAAGTTTCCAGCATGTACCATTGCAGCCAAGAGACGAATTTCTTCAACCACAACAGTATTGGATGTACAGGGCTTGgtatgttgtactactcttcaaagtttttctgaattatgtgcctcatcaataaaatatggttatggtgcatgtcttatggacttatagtttgtgtgtgtga---
upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G55690.3 (Arabidopsis thaliana), 5'ss of exon 6
AGAGTTTGAAAAGGCTCTACTTGAGAAATTCCCTGCTTGTTCAATTGCAGCAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGgtatgt---caatctcttgcaaa----cagtctttacccaaagtgaatttggttctctatcttaattttgtgccttttaaaa----agtttctccttctcgaatgctttta----------
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AGAGTTTGAGAGAGCTCTCCAGGAGAAATTCCCTGCATGCTCAATTGCTGCAAAGCGTCGAATCTGTTCCACAACTACAATACTGGATGTGCAAGGATTGgtaattatttaagttcttaccaagctttggaatatttttgcattgtgttatgctctgaagcagaactt-gcacctttagtgcttctagattcttatctgtgaagtgtcatgttaatgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110690338|gb|EE067360.1|EE067360EST: CAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTG GGTATGAAAAATTTTACTCGAACTGCTGCAAATCTTGTGGCTGCCATGGCT
genomic: CAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGgtatgtcaat ... gtcattacagGGTATGAAAAATTTTACTCGAACTGCTGCAAATCTTGTGGCTGCCATGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGTTTGAAAAGGCTCTACTTGAGAAATTCCCTGCTTGTTCAATTGCAGCAAAGAGACGGATCTGTTCGACAACAACGATATTAGATGTACAGGGCTTGgtatgtcaatctcttgcaaacagtctttacccaaagtgaatttggttctctatcttaattttgtgccttttaaaaagtttctccttctcgaatgctttta
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc