1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATGAGTCAGTGCGGTTATGGAATGTTCACACGGGAATATGCATTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttgactacaaaagcctttgactagcctttgttgcttttagttgtttttcaccatctggttttgttactgtttcctttgtgccttatattaaggaatttaatctctaaccgttagtttatgatgactattgtag
species | Vitis vinifera |
transcript | Vv19s0014g05210.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTG GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACEST: gi|161719190|gb|FC065436.1|FC065436
genomic: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttg ... actattgtagGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAAC
EST: TTTTGATATTTGCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTG GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACEST: gi|351053554|gb|FQ459301.1|FQ459301
genomic: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttg ... actattgtagGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAAC
EST: TTTTGATATTTGCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTG GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACEST: gi|351036699|gb|FQ457412.1|FQ457412
genomic: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttg ... actattgtagGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAAC
EST: TTTTGATATTTGCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTG GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACEST: gi|351043856|gb|FQ452650.1|FQ452650
genomic: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttg ... actattgtagGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAAC
EST: TTTTGATATTTGCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTG GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTAATGGACAAEST: gi|352791431|gb|FQ481010.1|FQ481010
genomic: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttg ... actattgtagGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTA-TGGACAA
EST: TTTTGATATTTGCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTG GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACEST: gi|294965480|gb|GW839051.1|GW839051
genomic: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttg ... actattgtagGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAAC
EST: TTTTGATATTTGCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTG GACNTTCACCCTTCAAACATATATCGCATTGCGAGTTGTGGTATGGACAACEST: gi|351033874|gb|FQ447912.1|FQ447912
genomic: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttg ... actattgtagGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAAC
EST: TTTTGATATTTGCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTG GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAAC
genomic: TTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttg ... actattgtagGACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAGTCAGTGCGGTTATGGAATGTTCACACGGGAATATGCATTTTGATATTTTCTGGAGCTGGGGGTCATCGCAATGAAGTCTTGAGTGTGgtaggtgttgactacaaaagcctttgactagcctttgttgcttttagttgtttttcaccatctggttttgttactgtttcctttgtgccttatattaaggaatttaatctctaaccgttagtttatgatgactattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT