1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCAAATGAATGTGCTTGGGCTTACGGCATGAACATATTTGACCTAGAGGCTTGGAGGAAGACCAACATAAGCCGCACATACCATAGCTGGCTTCAAGAGgtatgcatttgtttctgtccacattaggcctcaaaaattgatttgggtcgtaagtactattatctgaaagtgacaatacattcatcattcatagttttggaaattgactacattgttttgaatgcag
species | Vitis vinifera |
transcript | Vv19s0014g05130.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTGGAGGAAGACCAACATAAGCCGCACATACCATAGCTGGCTTCAAGAG AACTTGAAATCAGACCTCAGTTTGTGGCAATTGGGCACATTACCACCAGGCEST: gi|122690411|gb|EC952332.1|EC952332
genomic: CTTGGAGGAAGACCAACATAAGCCGCACATACCATAGCTGGCTTCAAGAGgtatgcattt ... ttgaatgcagAACTTGAAATCAGACCTCAGTTTGTGGCAATTGGGCACATTACCACCAGGC
EST: CTTGGAGGAAGACCAACATAAGCCGCACATACCATAGCTGGCTTCAAGAG AACTTGAAATCAGACCTCAGTTTGTGGCAATTGGGCACATTACCACCAGGC
genomic: CTTGGAGGAAGACCAACATAAGCCGCACATACCATAGCTGGCTTCAAGAGgtatgcattt ... ttgaatgcagAACTTGAAATCAGACCTCAGTTTGTGGCAATTGGGCACATTACCACCAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAATGAATGTGCTTGGGCTTACGGCATGAACATATTTGACCTAGAGGCTTGGAGGAAGACCAACATAAGCCGCACATACCATAGCTGGCTTCAAGAGgtatgcatttgtttctgtccacattaggcctcaaaaattgatttgggtcgtaagtactattatctgaaagtgacaatacattcatcattcatagttttggaaattgactacattgttttgaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA