Sequence
atgc intronic sequence ATGC exonic sequenceGCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctcaatttttatttttatttgttttttatttcttagaaagaaagacatgataagcataagaaaaaaaaaatgatttacaccatatttgtccatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 6
GCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctcaatttttatttttatttgttttttatttcttagaaagaaagacatgataagcataagaaaaaaaaaatgatttacaccatatttgtccatg----------------------------------------------------------------
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GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGGgtatgatgatactcatccctcatatttcatcacaaaaagtagtttgcaccaaat-atacacacccctatacaaagctaaattactaactattcattagtgttgtcataatcatttattgcttttaggatgcttcttattctgtagttaatgttgaatcaagcag
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 6
GCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctcaatttttatttttatttgttttttat---ttcttagaaagaaagacatgataagcataagaaaaaaaaaatgatttacaccatatttgtccatg
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GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtctttgctactcatcacctttataacaaaaaagtagtttgtaaaagagaaaaggaaggt-taggttaaatatgtt--tttactccctataaatatagc
upper sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G36140.2 (Glycine max), 5'ss of exon 6
GCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctcaatttttatttttatttgttttttatttcttagaaagaaagacatgataagcataagaaaaaaaaaatgatttacaccatatttgtccatg------------
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GCAGTTCCTCCCGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatg--tcattgctaatcatcacct---------ttataacaaaaaagtagtttgtaaa-agaagaaaggagggttaggttaaatgtttttactccctcacaaaatacaggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713605|gb|FC063415.1|FC063415EST: GGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGG GTTGCTGATTTTGGGCTTTCGAGGGAAGAGATGGTTAGCAAACATGCATCT
genomic: GGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctca ... tttaaaacagGTTGCTGATTTTGGGCTTTCGAGGGAAGAGATGGTTAGCAAACATGCATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctcaatttttatttttatttgttttttatttcttagaaagaaagacatgataagcataagaaaaaaaaaatgatttacaccatatttgtccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa