Sequence
atgc intronic sequence ATGC exonic sequenceATGTTTTCTCTTATCCGGAGGATGATAGTGTTTTGGACCCCCTTCTAGCACAGCATTTGGCATTTTTTGGTATTGATTTTTCATCATTACAGAAGgttagtctttcttttgatctgcatttatccttacaacttttatatacatggagttgccttcgtcaatacatatttaaaattcaattgtgacctctttgta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G22240.1 (Glycine max), 5'ss of exon 5
ATGTTTTCTCTTATCCGGAGGATGATAGTGTTTTGGACCCCCTTCTAGCACAGCATTTGGCATTTTTTGGTATTGATTTTTCATCATTACAGAAGgttagtc-tttcttttgatctgcatttatccttaca-acttttatatacatgga--gttgccttcgtcaatacatatttaaaattcaattgtgacctctttgta----------------------------------------------------------------------------------
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ATGTTTACTCTTATCCAGATGATGAAAGTGTCTTGGATCCACAATTAGCGCAGCATCTGGCATTTTTTGGCATTGACTTTTCATCACTACGAAAGgttaattatttatcttgaaatgatacttttcacgcacaataaaaaatatattaattattaatcttgagtataaacttttgtcttgttactccaacaggcatggcgtaagagtgtacttaaaattaattaaatttaaatatcacttgactcttaatattttaaactggtccaatttcttatattcag
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G39770.1 (Glycine max), 5'ss of exon 5
ATGTTTTCTCTTATCCGGAGGATGATAGTGTTTTGGACCCCCTTCTAGCACAGCATTTGGCATTTTTTGGTATTGATTTTTCATCATTACAGAAGgttagtc-tttcttttgatctg----catttatccttacaacttttatatacatggagttgccttcgtcaatacatatttaaaattcaattgtgacct-ctttgta---------------------------------------------------------------------------------
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ATGTTTACTCTTATCCAGACGATGAAAGTGTCTTGGATCCACAATTAGCACAGCATCTGGCATTTTTTGGCCTTGACTTTTCATCACTACGAAAGgttaattatttatcttgaaatgatacttttcacacacacaatcaaactatattaattatttgtcttgagaataaacttttgtcttgttactccaacaggcatggcataagagcgtacttgcaattaattaaatttaaatatcacttgactcttaatattttaaaatggtccactttcttatattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719286|gb|FC068262.1|FC068262EST: TAGCACAGCATTTGGCATTTTTTGGTATTGATTTTTCATCATTACAGAAG ACTGAAATGACTACTGCTGAAAGGGAACTTGACCAGAATACCAATTTTGAT
genomic: TAGCACAGCATTTGGCATTTTTTGGTATTGATTTTTCATCATTACAGAAGgttagtcttt ... ttgtttccagACTGAAATGACTACTGCTGAAAGGGAACTTGACCAGAATACCAATTTTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTTTTCTCTTATCCGGAGGATGATAGTGTTTTGGACCCCCTTCTAGCACAGCATTTGGCATTTTTTGGTATTGATTTTTCATCATTACAGAAGgttagtctttcttttgatctgcatttatccttacaacttttatatacatggagttgccttcgtcaatacatatttaaaattcaattgtgacctctttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattcaa