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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTTTCGGCATGCAATCTGGTGAACTATTTTGGGAAAATGGTTCTTGGAGGTTCTGGTGTTGGTCAAATCACTCTCTACCCTATTCTTATTAGGAAGgtgtgtcacaatactttattcttagaaggtttgggctagttattaatttctttatagtatgacttatatttctttttggcag

Basic information

species Vitis vinifera
transcript Vv19s0014g03680.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 6
TATTCTTTCGGCATGCAATCTGGTGAACTATTTTGGGAAAATGGTTCTTGGAGGTTCTGGTGTTGGTCAAATCACTCTCTACCCTATTCTTATTAGGAAGgtgtgtcacaatactttattcttagaaggtttgggctagttattaatttctttatagtatgacttatatttctttttggcag
|||||||||||| |||||||| || || |||||||| || ||||  ||||| || ||||| |||||||| ||  |  | || ||| | ||| | |  ||||||   ||||   ||| | |   | |   | |   || | | ||       ||||    |||||| | |    || |  |||
TATTCTTTCGGCTTGCAATCTTGTAAATTATTTTGGAAAGATGGACCTTGGTGGCTCTGGCGTTGGTCAGATAGCAGTTTATCCTGTACTTGTAAAAAAGgtg---cacag--cttcagttacaaacaatat---cttgatgtt-------ttatgcactgacttctttgctgttatttcag

upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 6
TATTCTTTCGGCATGCAATCTGGTGAACTATTTTGGGAAAATGGTTCTTGGAGGTTCTGGTGTTGGTCAAATCACTCTCTACCCTATTCTTATTAGGAAGgtgtgtcacaatactttattcttagaaggtttgggctagttattaatttctt----tatagtatgacttatatttctttttggcag
||||||||| |||||||| || |||||||||||||| || ||||||||||| |||||||||||||| || || |||||||||||||| ||||| | ||||||  ||   || | ||| |       |    |||         | | |||||    |||  | | | | | |||  | ||| |   
TATTCTTTCCGCATGCAACCTTGTGAACTATTTTGGAAAGATGGTTCTTGGTGGTTCTGGTGTTGGCCAGATTACTCTCTACCCTATACTTATGAAGAAGgttggtgtaaagaatttctaacctagacacctggctc--cccctgacttcttggactatcatttaa-tcaaattaatgtttag---