Sequence
atgc intronic sequence ATGC exonic sequenceCCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 7
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatatta---gctatactttattcttaattagattcttcatt----tttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
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TCCAAGAGTCACACCAGAGGTTACAAGGGACGTATGCCTGTTAGCTAGAATGATGGCTGCTAACTTATACTATGCACAGATAGAGGATCTGATGTTTGAGgtaaaaataataggttgtactat-ttaaaggatatatgctgtattgatgtttgatctcacacaaaattttgaccacct-gcag-------------------------------------------------------------------------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 5
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagct-atactttattcttaat-tagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
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TCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAGAATGATGGCTTCAAATTTATACTGCTCGCAAATTGAGGATCTCATGTTTGAGgtaagaattacttcatcccttatcttccacacatataaatcaattttattaaattctccaaattctggcag--------------------------------------------------------------------------------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 5
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
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TCCAAGAGTCACGCCAGAGGTTACAAGGGATGTATGCTTGTTGGCTAGAATGATGGCTGCTAATTTGTATAATGCCCAGATAGAAGACCTGATGTTTGAGgtaaaagtaagg-acacatt-tttttaata----ttgtagtgatattagtctcaca-agaattctttttatcgcatgcag---------------------------------------------------------------------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G473001_T02 (Zea mays), 5'ss of exon 4
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
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TCCAAGAGTGACACCAGAGGTTACCAGGGATGTCTGCTTGCTTGCCAGAATGATGGCATCAAACTTGTACTGCTCTCAGATTGAGGATCTCATGTTTGAGgtgtctattactttaa---taatcagaatatagttcataacatcatttatatcagaggattggagttgatagattgaaa--tgcttgcag-----------------------------------------------------------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G09810.1 (Glycine max), 5'ss of exon 6
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
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TCCAAGAGTAACTCCTGAAGTGACCAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTGTACTACTCCCAGATAGAGGATCTTATGTTTGAGgtaattgatgactctagaaatcttttaaaatgat-ctttgttgttggttaattac--aatggcactgatttcccatgttgtttct-gtag-----------------------------------------------------------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 6
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
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TCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccatagctctggcatacttttaaaatgat----catcgtggattgttaattactcttgaatcattttgctg-atttcccttcttatttctgtag--------------------------------------------------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G35840.1 (Glycine max), 5'ss of exon 5
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
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TCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGgtaatccatagctctggcatgttcataaaatgat----cattgtggatggtttattactcttgaatcattttgctg-atttcccttcttgtttctgtag--------------------------------------------------------
upper sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 5
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcagg-aggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
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TCCAAGAGTAACTCCAGAAGTGACAAGAGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTGTACTACTCCCAGATAGAGAATCTTATGTTTGAAgtaattaatagctctacaaatcttttaaaatgatctttgttgttggttaattattaaaatgacactgatttctctcccatgttgttt-ctgtag--------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699775|gb|EE077068.1|EE077068EST: TGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAG TTGTCTATGTGGCGATGCAATGACGAACTTCGTGTTCGTGCAGATGAACTC
genomic: TGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatatta ... tcattggcagTTGTCTATGTGGCGATGCAATGACGAACTTCGTGTTCGTGCAGATGAACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCAAGGGTGACTCCTGAGGTCACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTATACTATTCCCAGATAGAGGATCTTATGTTTGAGgtatatattagctatactttattcttaattagattcttcatttttctcctttcatggagcatcacttacttagcaggaggttgcttgctacattcattatcatacttgttgcagtcactattatgctaattttgctttgttattttcattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT