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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGCTTTTATCGGGCATTACTGGATCTTTATGAAGAAATGGAGCAAGAGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcaccaaattacctttcttctagatcctttatttttgcctgatttgggaccaattacttttcttctgatcctctattttaacatgatttgtatatatatatatatatatatatagatatataagctagtagcatgacctgcatgattatgtaactcag

Basic information

species Vitis vinifera
transcript Vv19s0014g01060.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110389616|gb|EC954469.1|EC954469
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|110361297|gb|EC924762.1|EC924762
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|110364302|gb|EC923825.1|EC923825
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|161719018|gb|FC067638.1|FC067638
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|110374643|gb|EC939551.1|EC939551
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|110360747|gb|EC924092.1|EC924092
EST:     AGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCTTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|110384100|gb|EC948516.1|EC948516
EST:     AAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|161717484|gb|FC068497.1|FC068497
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGC-AAATGGTCGAATCA-
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|161721108|gb|FC070370.1|FC070370
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|161716139|gb|FC068058.1|FC068058
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|110388132|gb|EC952850.1|EC952850
EST:     AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: AGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
EST: gi|110360659|gb|EC923942.1|EC923942
EST:     CCGTGTTCACTACGCAAAAGAAATG                         ATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA
genomic: CCGTGTTCACTACGCAAAAGAACTGgtttggcacc ... tgtaactcagATGAAAAAGCAAATCCAATCCTACTTTGTTGAAGCCAAATGGTCGAATCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAATGCTTTTATCGGGCATTACTGGATCTTTATGAAGAAATGGAGCAAGAGATGGCCAAGGAAGGAAAATTATACCGTGTTCACTACGCAAAAGAACTGgtttggcaccaaattacctttcttctagatcctttatttttgcctgatttgggaccaattacttttcttctgatcctctattttaacatgatttgtatatatatatatatatatatatagatatataagctagtagcatgacctgcatgattatgtaactcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC