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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATTgtgagtaacaagttgatatctctatctgtctcaattttgatgaaagaatgtgaagttctcatattgcataatggaactcag

Basic information

species Vitis vinifera
transcript Vv18s0164g00070.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 5
CCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATTgtgagtaacaagttga-tatctctatctgtctcaattttgatgaaagaatgtgaagttctcatattgcataatggaactcag-------------
 |||||||||||||||||| || ||||| ||||||| |||||| |||| ||||| || ||||| |||||  |||||||  ||   |   ||    |||     ||| || |          | || | |||| |||||   |     || | |              
TCGGCTTAACAACAACAGCTTGTCGGGTCCTATTCCCATGTCACTGACCAATATTACAGCTCTCCAAGTTCTgtgagtgccactatatctaaaaatatgctattcatttctctattttttgtatgcaattctaatatttttttcctcaatttatttgtctaatgtag

upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 5
CCGGCTTAACAACAACAGCCTGACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATTgtgagtaaca----agttgata------tctctatctgtctcaattttgatgaaagaatgtgaagttctcatattgcataatggaact--cag------
 ||||||||||| |||||| || | ||| |||| || |||||| |||||||||| || ||||| |||||  |||||||  ||    |  | | |      | | ||| | |||| ||| |    |   ||||  ||  | |  | || |  |||  |  |  ||       
TCGGCTTAACAATAACAGCTTGTCAGGTCCTATCCCCATGTCACTGACTAATATTACAGCTCTCCAAGTTCTgtgagtgccactatatctaaaaatatgctatttatttctctctattatttgtatgcaatgctaatattttttttttctcaatttatttgtcaaatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71873068|gb|DT022123.1|DT022123
EST:     ACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATT                         GGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTT
genomic: ACGGGTACTATTCCTATGTCATTGACTAATATCACGGCTCTGCAAGTATTgtgagtaaca ... tggaactcagGGATCTATCAAACAACCGCCTCTCAGGAGTGGTTCCAGACAATGGCTCTTT