Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTGCCAATGGAAAATTTGAATGGACGCAAACTTGTTGAAGCAGGAGAACTCTGTGAGAGGAGAAATGgtgctatgtcttacttttttgtccttaaacacaatatttgatggcttggaaatttatggattactcatgttcaattgtgtggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g02710.3 (Oryza sativa), 5'ss of exon 5
GTGGTGCCAATGGAAAATTTGAATGGACGCAAACTTGTTGAAGCAGGAGAACTCTGTGAGAGGAGAAATGgtgctatgtcttacttttttgtccttaaacacaatatttgatggcttggaaatttatggattactcatgttcaatt-gtgtggcag
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GTGGTGCCCATGGAAAATTTAAATGGTCGAAAACGTGTTGAAGAAGGGGAGCTTTGTGATAGGAGAAATGgtgatcaatcttatcttgtaaa--ttcatcacttgatgcagttctatgccaacttccta--tattcatgtttttttcatttttcag
upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G006069_T02 (Zea mays), 5'ss of exon 4
GTGGTGCCAATGGAAAATTTGAATGGACGCAAACTTGTTGAAGCAGGAGAACTCTGTGAGAGGAGAAATGgtgctatgtcttacttttttgtccttaaacacaatatttgatggct-tggaaatttatggattactcatgttcaattgtgtggcag
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GTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAGCTTTGTGATAGGAGAAATGgtgattggtcc-atttcttacaaattaatcactacaggcagttgttatgccaacatgttttttatatatatatttcccttcggcag
upper sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G02070.1 (Glycine max), 5'ss of exon 4
GTGGTGCCAATGGAAAATTTGAATGGACGCAAACTTGTTGAAGCAGGAGAACTCTGTGAGAGGAGAAATGgtgctatgtcttacttttttgtccttaaacacaatatttga-tggcttggaaatttatggattactcatgttcaattgtgtggcag
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GTAGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTATGTGAGAGAAGAAATGgtattgtatttctcctttaaaatcgtcagttaaatgattgactagctttgaaa-------atgcctgagttttttttatgtggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110419420|gb|EC985642.1|EC985642EST: GTTGAAGCAGGAGAACTCTGTGAGAGGAGAAATG GGAGAGGTGTTGATCTCAATCGGAATTGGAGTGTAGACTGGGGCAAAAAGG
genomic: GTTGAAGCAGGAGAACTCTGTGAGAGGAGAAATGgtgctatgtc ... tgtgtggcagGGAGAGGTGTTGATCTCAATCGGAATTGGAGTGTAGACTGGGGCAAAAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGTGCCAATGGAAAATTTGAATGGACGCAAACTTGTTGAAGCAGGAGAACTCTGTGAGAGGAGAAATGgtgctatgtcttacttttttgtccttaaacacaatatttgatggcttggaaatttatggattactcatgttcaattgtgtggcag
- - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA