1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaattcagagttcttatgccaaaaactgaattgggcagtaattccatagaagagataaatcaatgaaaaaaaaaaaaaaagggggtggggttggggcaatgatgtgaatagttattggggaatttgaattatggagaagatgattgaattagaatatgggtttgatgcag
species | Vitis vinifera |
transcript | Vv18s0122g00680.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAG ATTGGCAGGGGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCATEST: gi|351012854|gb|FQ430417.1|FQ430417
genomic: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaatt ... tttgatgcagATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
EST: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAG ATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCATEST: gi|351028617|gb|FQ446290.1|FQ446290
genomic: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaatt ... tttgatgcagATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
EST: CAAGGTTTGCTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAG ATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCATEST: gi|349827467|gb|FQ422335.1|FQ422335
genomic: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaatt ... tttgatgcagATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
EST: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAG ATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCATEST: gi|351029607|gb|FQ427447.1|FQ427447
genomic: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaatt ... tttgatgcagATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
EST: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAG ATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCATEST: gi|351014409|gb|FQ437411.1|FQ437411
genomic: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaatt ... tttgatgcagATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
EST: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAG ATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCATEST: gi|349832962|gb|FQ423084.1|FQ423084
genomic: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaatt ... tttgatgcagATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
EST: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAG ATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCATEST: gi|349826098|gb|FQ415903.1|FQ415903
genomic: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaatt ... tttgatgcagATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
EST: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAG ATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
genomic: CAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaatt ... tttgatgcagATTGGCAGGTGGGTTCAGGAGAACCAAGTGGATTTAAATCAGTGACAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGCCAGAGGATTTCAAGGTTTACTCAGATGAGGTCAACAAGTTCAAAATACAGATTCCCCAAGgtgagcaattcagagttcttatgccaaaaactgaattgggcagtaattccatagaagagataaatcaatgaaaaaaaaaaaaaaagggggtggggttggggcaatgatgtgaatagttattggggaatttgaattatggagaagatgattgaattagaatatgggtttgatgcag
- - - - - - - - - - - - - CAGATG